Publications by authors named "Will Fischer"

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Real-time monitoring of SARS-CoV-2 evolution during the COVID-19 pandemic.
Bette Korber, Will Fischer, James Theiler

Cell Host Microbe· November 2025

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SARS-CoV-2 variant transition dynamics are associated with vaccination rates, number of co-circulating variants, and convalescent immunity.
Lauren J Beesley, Kelly R Moran, Kshitij Wagh, Lauren A Castro, James Theiler, Will Fischer

EBioMedicine· May 2023

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US National Institutes of Health Prioritization of SARS-CoV-2 Variants.
Sam Turner, Arghavan Alisoltani, Debbie Bratt, Liel Cohen-Lavi, Bethany L Dearlove, Will M Fischer

Emerg Infect Dis· May 2023

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Characterization of SARS-CoV-2 Omicron BA.2.75 clinical isolates.
Ryuta Uraki, Shun Iida, Peter J Halfmann, Seiya Yamayoshi, Yuichiro Hirata, Will Fischer

Nat Commun· March 2023

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Trivalent mosaic or consensus HIV immunogens prime humoral and broader cellular immune responses in adults.
Kristen W Cohen, Andrew Fiore-Gartland, Stephen R Walsh, Karina Yusim, Nicole Frahm, Will Fischer

J Clin Invest· February 2023

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Defining the risk of SARS-CoV-2 variants on immune protection.
Marciela M DeGrace, Elodie Ghedin, Matthew B Frieman, Florian Krammer, Alba Grifoni, Will M Fischer

Nature· May 2022

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Preexisting memory CD4+ T cells contribute to the primary response in an HIV-1 vaccine trial.
Suzanne L Campion, Elena Brenna, Elaine Thomson, Will Fischer, Kristin Ladell

J Clin Invest· December 2021

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HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens.
Will Fischer, Elena E Giorgi, Srirupa Chakraborty, Kien Nguyen, Tanmoy Bhattacharya

Cell Host Microbe· July 2021

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SARS-CoV-2 variant B.1.1.7 is susceptible to neutralizing antibodies elicited by ancestral Spike vaccines.
Xiaoying Shen, Haili Tang, Charlene McDanal, Kshitij Wagh, Will Fischer

bioRxiv· January 2021

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Vaccine Advances against Venezuelan, Eastern, and Western Equine Encephalitis Viruses.
Zachary R Stromberg, Will Fischer, Steven B Bradfute, Jessica Z Kubicek-Sutherland, Peter Hraber

Vaccines (Basel)· June 2020

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T cell-based strategies for HIV-1 vaccines.
Bette Korber, Will Fischer

Hum Vaccin Immunother· March 2020

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Sparse coding of pathology slides compared to transfer learning with deep neural networks.
Will Fischer, Sanketh S Moudgalya, Judith D Cohn, Nga T T Nguyen, Garrett T Kenyon

BMC Bioinformatics· December 2018

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Structural Transition and Antibody Binding of EBOV GP and ZIKV E Proteins from Pre-Fusion to Fusion-Initiation State.
Anna Lappala, Wataru Nishima, Jacob Miner, Paul Fenimore, Will Fischer

Biomolecules· May 2018

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Correction: Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection.
Gustavo H Kijak, Eric Sanders-Buell, Agnes-Laurence Chenine, Michael A Eller, Nilu Goonetilleke, Will Fischer

PLoS Pathog· September 2017

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Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection.
Gustavo H Kijak, Eric Sanders-Buell, Agnes-Laurence Chenine, Michael A Eller, Nilu Goonetilleke, Will Fischer

PLoS Pathog· July 2017

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Integrated sequence and immunology filovirus database at Los Alamos.
Karina Yusim, Hyejin Yoon, Brian Foley, Shihai Feng, Jennifer Macke, Will Fischer

Database (Oxford)· January 2017

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Erratum for Smith et al., Effective Cytotoxic T Lymphocyte Targeting of Persistent HIV-1 during Antiretroviral Therapy Requires Priming of Naive CD8+ T Cells.
Kellie N Smith, Robbie B Mailliard, Paolo A Piazza, Will Fischer, Bette T Korber

mBio· July 2016

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Effective Cytotoxic T Lymphocyte Targeting of Persistent HIV-1 during Antiretroviral Therapy Requires Priming of Naive CD8+ T Cells.
Kellie N Smith, Robbie B Mailliard, Paolo A Piazza, Will Fischer, Bette T Korber

mBio· May 2016

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Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection.
Eun-Young Kim, Ramon Lorenzo-Redondo, Susan J Little, Yoon-Seok Chung, Prabhjeet K Phalora, Will Fischer

PLoS Pathog· July 2014

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Immunological and virological mechanisms of vaccine-mediated protection against SIV and HIV.
Mario Roederer, Brandon F Keele, Stephen D Schmidt, Rosemarie D Mason, Hugh C Welles, Will Fischer

Nature· January 2014

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A multiple-alignment based primer design algorithm for genetically highly variable DNA targets.
Johanna Brodin, Mohan Krishnamoorthy, Gayathri Athreya, Will Fischer, Peter Hraber

BMC Bioinformatics· August 2013

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Distinct evolutionary pressures underlie diversity in simian immunodeficiency virus and human immunodeficiency virus lineages.
Will Fischer, Cristian Apetrei, Mario L Santiago, Yingying Li, Rajeev Gautam

J Virol· December 2012

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Epitope-specific CD8+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection.
Evan M Cale, Peter Hraber, Elena E Giorgi, Will Fischer, Tanmoy Bhattacharya

J Virol· April 2011

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing.
Will Fischer, Vitaly V Ganusov, Elena E Giorgi, Peter T Hraber, Brandon F Keele

PLoS One· August 2010

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