Publications by authors named "William Andreopoulos"

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Methodology for Extracting High-Molecular-Weight DNA from Field Collections of Macrofungi.
Leigh A Burgoyne, Andy R Nilsen, Teresa Lebel, Pamela S Catcheside, Tom W May, William Andreopoulos

J Fungi (Basel)· June 2025

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Consecutive low-frequency shifts in A/T content denote nucleosome positions across microeukaryotes.
Stephen J Mondo, Guifen He, Aditi Sharma, Doina Ciobanu, Robert Riley, William B Andreopoulos

iScience· May 2025

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Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota).
Alden C Dirks, Andrew S Methven, Andrew N Miller, Michelle Orozco-Quime, Sundy Maurice, William Andreopoulos

Mol Phylogenet Evol· April 2025

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Evolutionary genomic analyses of canine infections identify a relic capsular locus associated with resistance to multiple classes of antimicrobials.
Kristina Ceres, Jordan D Zehr, Chloe Murrell, Jean K Millet, Qi Sun, William B Andreopoulos

Appl Environ Microbiol· August 2024

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Genome-scale model development and genomic sequencing of the oleaginous clade .
Jeffrey J Czajka, Yichao Han, Joonhoon Kim, Stephen J Mondo, Beth A Hofstad, William Andreopoulos

Front Bioeng Biotechnol· April 2024

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Environment-specific virocell metabolic reprogramming.
Cristina Howard-Varona, Morgan M Lindback, Jane D Fudyma, Azriel Krongauz, Natalie E Solonenko, William B Andreopoulos

ISME J· January 2024

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Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
Riccardo Baroncelli, José F Cobo-Díaz, Tiziano Benocci, Mao Peng, Evy Battaglia, William Andreopoulos

Gigascience· January 2024

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Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus.
Jonathan M Plett, Shingo Miyauchi, Emmanuelle Morin, Krista Plett, Johanna Wong-Bajracharya, William Andreopoulos

Mol Biol Evol· March 2023

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A global phylogenomic analysis of the shiitake genus .
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, William Andreopoulos

Proc Natl Acad Sci U S A· March 2023

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Diploid-dominant life cycles characterize the early evolution of Fungi.
Kevin R Amses, D Rabern Simmons, Joyce E Longcore, Stephen J Mondo, Kensuke Seto, William Andreopoulos

Proc Natl Acad Sci U S A· September 2022

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Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
Ying Chang, Yan Wang, Stephen Mondo, Steven Ahrendt, William Andreopoulos

iScience· August 2022

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Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk-cap (Lactarius) mushrooms.
Annie Lebreton, Nianwu Tang, Alan Kuo, Kurt LaButti, William Andreopoulos

New Phytol· July 2022

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Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus .
Jingcheng Zhang, Nan Shen, Chuang Li, Xingjie Xiang, Gaolei Liu, William Andreopoulos

J Adv Res· May 2022

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The Population on in the Great Lakes Region Is Highly Diverse with a Contributory Influence of Clonality.
Chase R Crowell, Dustin G Wilkerson, Mariami Beckauri, Ali R Cala, Patrick W McMullen, William Andreopoulos

Phytopathology· April 2022

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Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
Brian Looney, Shingo Miyauchi, Emmanuelle Morin, Elodie Drula, Pierre Emmanuel Courty, William Andreopoulos

New Phytol· March 2022

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Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes.
William B Andreopoulos, Alexander M Geller, Miriam Lucke, Jan Balewski, Alicia Clum

Nucleic Acids Res· February 2022

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Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Fantin Mesny, Shingo Miyauchi, Thorsten Thiergart, Brigitte Pickel, Lea Atanasova, William Andreopoulos

Nat Commun· December 2021

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Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation.
Ole Christian Hagestad, Lingwei Hou, Jeanette H Andersen, Espen H Hansen, Bjørn Altermark, William Andreopoulos

IMA Fungus· August 2021

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The extracellular contractile injection system is enriched in environmental microbes and associates with numerous toxins.
Alexander Martin Geller, Inbal Pollin, David Zlotkin, Aleks Danov, Nimrod Nachmias, William B Andreopoulos

Nat Commun· June 2021

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Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity.
Francisco J Ruiz-Dueñas, José M Barrasa, Marisol Sánchez-García, Susana Camarero, Shingo Miyauchi, William Andreopoulos

Mol Biol Evol· April 2021

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Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
Lotus A Lofgren, Nhu H Nguyen, Rytas Vilgalys, Joske Ruytinx, Hui-Ling Liao, William Andreopoulos

New Phytol· April 2021

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A single-cell genomics pipeline for environmental microbial eukaryotes.
Doina Ciobanu, Alicia Clum, Steven Ahrendt, William B Andreopoulos, Asaf Salamov

iScience· April 2021

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Megaphylogeny resolves global patterns of mushroom evolution.
Torda Varga, Krisztina Krizsán, Csenge Földi, Bálint Dima, Marisol Sánchez-García, William Andreopoulos

Nat Ecol Evol· April 2019

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