Publications by authors named "Guifen He"

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Recruitment, rewiring and deep conservation in flowering plant gene regulation.
Leo A Baumgart, Sharon I Greenblum, Abraham Morales-Cruz, Peng Wang, Yu Zhang, Cindy Chen, Guifen He

Nat Plants· August 2025

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Consecutive low-frequency shifts in A/T content denote nucleosome positions across microeukaryotes.
Stephen J Mondo, Guifen He, Aditi Sharma, Doina Ciobanu, Robert Riley, M Catherine Aime

iScience· May 2025

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Disentangling the relationship between state self-compassion and state coping self-efficacy using dynamic structural equation modeling.
Huihui Wang, Guifen He, Enna Wang, Yang Wang, Ziqi Wang, Ming Qing Zheng

Appl Psychol Health Well Being· November 2024

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Neurospora intermedia from a traditional fermented food enables waste-to-food conversion.
Vayu Maini Rekdal, José Manuel Villalobos-Escobedo, Nabila Rodriguez-Valeron, Mikel Olaizola Garcia, Diego Prado Vásquez, Ana Calheiros de Carvalho, Guifen He, Christopher Daum

Nat Microbiol· October 2024

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Is Working Memory Necessary for Both Selection and Calculation in Level 1 Visual Perspective Taking? Evidence from Children and Adults.
Guifen He, Wei Song, Peiqi Dong, Canmei Xu, Yanlin Zhou

Behav Sci (Basel)· October 2024

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Corrigendum to "Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin" [Ecotoxicol. Environ. Saf. 270 (2024) 115808].
Amal Ben Ayed, Imen Akrout, Karima Staita, Quentin Albert, Stéphane Greff, Guifen He

Ecotoxicol Environ Saf· June 2024

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Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment.
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie Barry, Hengchi Chen, Guifen He

Nat Plants· February 2024

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Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin.
Amal Ben Ayed, Imen Akrout, Karima Staita, Quentin Albert, Stéphane Greff, Guifen He

Ecotoxicol Environ Saf· January 2024

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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning.
Harrison Ho, Mansi Chovatia, Rob Egan, Guifen He, Yuko Yoshinaga

PeerJ· September 2023

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A global phylogenomic analysis of the shiitake genus .
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Bernard Henrissat, Karen W Hughes, Guifen He

Proc Natl Acad Sci U S A· March 2023

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Diversity of genomic adaptations to the post-fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development.
Andrei S Steindorff, Kyungyong Seong, Akiko Carver, Sara Calhoun, Monika S Fischer, Bernard Henrissat, Guifen He, Matthew Traxler

New Phytol· November 2022

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The western redcedar genome reveals low genetic diversity in a self-compatible conifer.
Tal J Shalev, Omnia Gamal El-Dien, Macaire M S Yuen, Shu Shengqiang, Shaun D Jackman, Christopher Plott, Guifen He

Genome Res· October 2022

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Dynamic genome evolution in a model fern.
D Blaine Marchant, Guang Chen, Shengguan Cai, Fei Chen, Peter Schafran, Shengqiang Shu, Guifen He, Adam Healey, Shengchun Xu, Günter Theißen, Zheng Li, Zhong-Hua Chen

Nat Plants· September 2022

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Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus .
Jingcheng Zhang, Nan Shen, Chuang Li, Xingjie Xiang, Gaolei Liu, Guifen He, Man Kit Cheung

J Adv Res· May 2022

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Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
Brian Looney, Shingo Miyauchi, Emmanuelle Morin, Elodie Drula, Pierre Emmanuel Courty, Guifen He, Bernard Henrissat, P Brandon Matheny

New Phytol· March 2022

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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates.
Jennifer L Brown, Candice L Swift, Stephen J Mondo, Susanna Seppala, Asaf Salamov, Bernard Henrissat, John K Henske, Guifen He, Michelle A O'Malley

Biotechnol Biofuels· December 2021

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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.
Marc W Van Goethem, Andrew R Osborn, Benjamin P Bowen, Peter F Andeer, Tami L Swenson, Guifen He, Ferran Garcia-Pichel, Trent R Northen

Commun Biol· November 2021

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Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete .
Felix Heeger, Elizabeth C Bourne, Christian Wurzbacher, Elisabeth Funke, Anna Lipzen, Guifen He

J Fungi (Basel)· October 2021

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Intra-species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus.
Krista L Plett, Annegret Kohler, Teresa Lebel, Vasanth R Singan, Diane Bauer, Guifen He

Environ Microbiol· April 2021

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Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity.
Francisco J Ruiz-Dueñas, José M Barrasa, Marisol Sánchez-García, Susana Camarero, Shingo Miyauchi, Remedios Pacheco, Guifen He, Bernard Henrissat

Mol Biol Evol· April 2021

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Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes.
Andrei S Steindorff, Akiko Carver, Sara Calhoun, Kyra Stillman, Haowen Liu, Guifen He

Environ Microbiol· January 2021

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A comparative genomics study of 23 Aspergillus species from section Flavi.
Inge Kjærbølling, Tammi Vesth, Jens C Frisvad, Jane L Nybo, Sebastian Theobald, Guifen He, Stephen Mondo, Bernard Henrissat

Nat Commun· February 2020

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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network.
Claire Khosravi, Joanna E Kowalczyk, Tania Chroumpi, Evy Battaglia, Maria-Victoria Aguilar Pontes, Guifen He

BMC Genomics· November 2019

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Genome Sequencing.
Yuko Yoshinaga, Christopher Daum, Guifen He, Ronan O'Malley

Methods Mol Biol· February 2019

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Genomic and Genetic Insights Into a Cosmopolitan Fungus, (Eurotiales).
Andrew S Urquhart, Stephen J Mondo, Miia R Mäkelä, James K Hane, Ad Wiebenga, Guifen He, Sirma Mihaltcheva

Front Microbiol· December 2018

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