Publications by authors named "Yan Asmann"

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Genomics Define Malignant Transformation in Myeloma Precursor Conditions.
Francesco Maura, P Leif Bergsagel, Bachisio Ziccheddu, Shaji Kumar, Kylee Maclachlan, Yan Asmann

J Clin Oncol· October 2025

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Brain transcriptomics highlight abundant gene expression and splicing alterations in non-neuronal cells in aFTLD-U.
Sara Alidadiani, Júlia Faura, Sarah Wynants, Nele Peeters, Marleen Van den Broeck, Yan W Asmann

Acta Neuropathol· August 2025

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Methylome analysis of FTLD patients with TDP-43 pathology identifies epigenetic signatures specific to pathological subtypes.
Cristina T Vicente, Tejasvi Niranjan, Elise Coopman, Júlia Faura, Sara Alidadiani, Yan Asmann

Mol Neurodegener· July 2025

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Immunopipe: a comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline.
Panwen Wang, Yue Yu, Haidong Dong, Shuwen Zhang, Zhifu Sun, Yan W Asmann

NAR Genom Bioinform· June 2025

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Analysis of the splicing landscape of the frontal cortex in FTLD-TDP reveals subtype specific patterns and cryptic splicing.
Júlia Faura, Bavo Heeman, Cyril Pottier, Matthew C Baker, Mariely DeJesus-Hernandez, Yan Asmann

Acta Neuropathol· June 2025

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Impact of spaceflight on gene expression in cultured human mesenchymal stem/stromal cells.
Peng Huang, Bryan T Piatkowski, Yesesri Cherukuri, Yan W Asmann, Abba C Zubair

PLoS One· May 2025

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Deciphering distinct genetic risk factors for FTLD-TDP pathological subtypes via whole-genome sequencing.
Cyril Pottier, Fahri Küçükali, Matt Baker, Anthony Batzler, Gregory D Jenkins, Yan Asmann

Nat Commun· April 2025

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Corrigendum to "Identification of gene regulatory networks associated with breast cancer patient survival using an interpretable deep neural network model" [Expert Syst. Appl. 262 (2025) 125632].
Xue Wang, Vivekananda Sarangi, Daniel P Wickland, Shaoyu Li, Duan Chen, Yan W Asmann

Expert Syst Appl· April 2025

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Identification of Gene Regulatory Networks Associated with Breast Cancer Patient Survival Using an Interpretable Deep Neural Network Model.
Xue Wang, Vivekananda Sarangi, Daniel P Wickland, Shaoyu Li, Duan Chen, Yan W Asmann

Expert Syst Appl· March 2025

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Single-cell multiomics reveals disrupted glial gene regulatory programs in Alzheimer's disease via interpretable machine learning.
Shuwen Zhang, Hongru Hu, Xue Wang, Chengjie Xiong, Yan W Asmann

bioRxiv· March 2025

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Functional variant rs9344 at 11q13.3 regulates CCND1 expression in multiple myeloma with t(11;14).
Hongwei Tang, Huihuang Yan, Suganti Shivaram, Stacey Lehman, Neeraj Sharma, Yan Asmann

Leukemia· January 2025

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Molecular markers of proliferation, DNA repair, and immune infiltration defines high-risk subset of resectable retroperitoneal sarcomas.
Nathan D Seligson, Yan W Asmann, Tariq Almerey, Yaquelin Coll Zayas, Mark A Edgar

Surg Oncol· October 2024

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Effects of PreOperative radiotherapy in a preclinical glioblastoma model: a paradigm-shift approach.
Beatriz I Fernandez-Gil, Paula Schiapparelli, Juan P Navarro-Garcia de Llano, Andrea Otamendi-Lopez, Maria Jose Ulloa-Navas, Yan W Asmann

J Neurooncol· September 2024

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Cell-specific cross-talk proteomics reveals cathepsin B signaling as a driver of glioblastoma malignancy near the subventricular zone.
Emily S Norton, Lauren A Whaley, Vanessa K Jones, Mieu M Brooks, Marissa N Russo, Yan W Asmann

Sci Adv· August 2024

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Transcriptomic classification of diffuse large B-cell lymphoma identifies a high-risk activated B-cell-like subpopulation with targetable MYC dysregulation.
Matthew E Stokes, Kerstin Wenzl, C Chris Huang, María Ortiz, Chih-Chao Hsu, Yan W Asmann

Nat Commun· August 2024

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Multiomic analysis identifies a high-risk signature that predicts early clinical failure in DLBCL.
Kerstin Wenzl, Matthew E Stokes, Joseph P Novak, Allison M Bock, Sana Khan, Yan Asmann

Blood Cancer J· June 2024

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Deciphering Distinct Genetic Risk Factors for FTLD-TDP Pathological Subtypes via Whole-Genome Sequencing.
Cyril Pottier, Fahri Küçükali, Matt Baker, Anthony Batzler, Gregory D Jenkins, Yan Asmann

medRxiv· June 2024

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Comprehensive profiling of cancer neoantigens from aberrant RNA splicing.
Daniel P Wickland, Colton McNinch, Erik Jessen, Brian Necela, Barath Shreeder, Yan W Asmann

J Immunother Cancer· May 2024

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CSF biomarkers of immune activation and Alzheimer's disease for predicting cognitive impairment risk in the elderly.
Francis Shue, Launia J White, Rachel Hendrix, Jason Ulrich, Rachel L Henson, Yan W Asmann

Sci Adv· April 2024

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Deconvolution reveals cell-type-specific transcriptomic changes in the aging mouse brain.
Yingxue Ren, Xue Wang, Shuwen Zhang, Hongru Hu, Zachary Quicksall, Yan W Asmann

Sci Rep· October 2023

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APOE deficiency impacts neural differentiation and cholesterol biosynthesis in human iPSC-derived cerebral organoids.
Jing Zhao, Tadafumi C Ikezu, Wenyan Lu, Jesse R Macyczko, Yonghe Li, Yan W Asmann

Stem Cell Res Ther· August 2023

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Cell-specific crosstalk proteomics reveals cathepsin B signaling as a driver of glioblastoma malignancy near the subventricular zone.
Emily S Norton, Lauren A Whaley, Vanessa K Jones, Mieu M Brooks, Marissa N Russo, Yan W Asmann

bioRxiv· August 2023

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Multiomic Analysis Identifies a High-Risk Metabolic and TME Depleted Signature that Predicts Early Clinical Failure in DLBCL.
Kerstin Wenzl, Matt Stokes, Joseph P Novak, Allison M Bock, Sana Khan, Yan Asmann

medRxiv· June 2023

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Disparity in the detection of chromosome 15 centromere in patients of African ancestry with a plasma cell neoplasm.
Alaa Koleilat, Hongwei Tang, Neeraj Sharma, Huihuang Yan, Shulan Tian, Yan W Asmann

Genet Med Open· May 2023

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LRP1 in vascular mural cells modulates cerebrovascular integrity and function in the presence of APOE4.
Hiroshi Oue, Yu Yamazaki, Wenhui Qiao, Chen Yuanxin, Yingxue Ren, Yan W Asmann

JCI Insight· April 2023

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