Publications by authors named "Ying-Hua Cheng"

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Cellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human Kidney.
Blue B Lake, Ricardo Melo Ferreira, Jens Hansen, Rajasree Menon, Jeannine Basta, Ying-Hua Cheng

bioRxiv· November 2025

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Cannabidiol exerts anti-inflammatory effects but maintains T effector memory cell differentiation in humans.
Debora L Gisch, Sachiko Koyama, Jumar Etkins, Gerald C So, Daniel J Fehrenbach, Ying-Hua Cheng

JCI Insight· November 2025

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FUSION: a web-based application for in-depth exploration of multi-omics data with brightfield histology.
Samuel P Border, Ricardo Melo Ferreira, Nicholas Lucarelli, Suhas Katari Chaluva Kumar, Anindya S Paul, Ying-Hua Cheng

Nat Commun· September 2025

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Integration of spatial protein imaging and transcriptomics in the human kidney tracks the regenerative potential of proximal tubules.
Mahla Asghari, Angela R Sabo, Daria Barwinska, Ricardo Melo Ferreira, Michael J Ferkowicz, Ying-Hua Cheng

Sci Adv· August 2025

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Cannabidiol exerts anti-inflammatory effects but maintains T effector memory cell differentiation: A Single-Cell Study in Humans.
Debora L Gisch, Sachiko Koyama, Jumar Etkins, Gerald C So, Daniel J Fehrenbach, Ying-Hua Cheng

bioRxiv· July 2025

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Alternative splicing of uromodulin enhances mitochondrial metabolism for adaptation to stress in kidney epithelial cells.
Azuma Nanamatsu, George J Rhodes, Kaice A LaFavers, Radmila Micanovic, Virginie Lazar, Ying-Hua Cheng

J Clin Invest· June 2025

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Relation equivariant graph neural networks to explore the mosaic-like tissue architecture of kidney diseases on spatially resolved transcriptomics.
Mauminah Raina, Hao Cheng, Ricardo Melo Ferreira, Treyden Stansfield, Chandrima Modak, Ying-Hua Cheng

Bioinformatics· June 2025

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A Phase I Trial of the Pharmacokinetic Interaction Between Cannabidiol and Tacrolimus.
Gerald C So, Jessica Bo Li Lu, Sachiko Koyama, Ying-Hua Cheng, Debora L Gisch

Clin Pharmacol Ther· March 2025

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NAD+ prevents chronic kidney disease by activating renal tubular metabolism.
Bryce A Jones, Debora L Gisch, Komuraiah Myakala, Amber Sadiq, Ying-Hua Cheng

JCI Insight· March 2025

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Inhibition of Tacrolimus Metabolism by Cannabidiol and Its Metabolites In Vitro.
Gerald C So, Jessica Bo Li Lu, Ying-Hua Cheng, Debora L Gisch, Sachiko Koyama

Clin Transl Sci· February 2025

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miRNA and mRNA Signatures in Human Acute Kidney Injury Tissue.
Danielle Janosevic, Thomas De Luca, Ricardo Melo Ferreira, Debora L Gisch, Ying-Hua Cheng

Am J Pathol· January 2025

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Thrombopoietic agents enhance bone healing in mice, rats, and pigs.
Paul J Childress, Jeffery J Nielsen, Thomas B Bemenderfer, Ushashi C Dadwal, Nabarun Chakraborty, Ying-Hua Cheng

J Bone Miner Res· December 2024

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Integration of spatial multiplexed protein imaging and transcriptomics in the human kidney tracks the regenerative potential timeline of proximal tubules.
Mahla Asghari, Angela R Sabo, Daria Barwinska, Ricardo Melo Ferreira, Michael Ferkowicz, Ying-Hua Cheng

bioRxiv· December 2024

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A transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease.
Ricardo Melo Ferreira, Debora L Gisch, Carrie L Phillips, Ying-Hua Cheng, Maansi Asthana

bioRxiv· December 2024

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NAD activates renal metabolism and protects from chronic kidney disease in a model of Alport syndrome.
Bryce A Jones, Debora L Gisch, Komuraiah Myakala, Amber Sadiq, Ying-Hua Cheng

bioRxiv· November 2024

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: A web-based application for in-depth exploration of multi-omics data with brightfield histology.
Samuel Border, Ricardo Melo Ferreira, Nicholas Lucarelli, David Manthey, Suhas Kumar, Ying-Hua Cheng

bioRxiv· August 2024

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The chromatin landscape of healthy and injured cell types in the human kidney.
Debora L Gisch, Michelle Brennan, Blue B Lake, Jeannine Basta, Mark S Keller, Ying-Hua Cheng

Nat Commun· January 2024

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A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease.
Victor Hugo Canela, William S Bowen, Ricardo Melo Ferreira, Farooq Syed, James E Lingeman, Ying-Hua Cheng

Nat Commun· July 2023

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The chromatin landscape of healthy and injured cell types in the human kidney.
Debora L Gisch, Michelle Brennan, Blue B Lake, Jeannine Basta, Mark Keller, Ying-Hua Cheng

bioRxiv· June 2023

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Alterations in Protein Translation and Carboxylic Acid Catabolic Processes in Diabetic Kidney Disease.
Kimberly S Collins, Michael T Eadon, Ying-Hua Cheng, Daria Barwinska, Ricardo Melo Ferreira

Cells· March 2022

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Clinical, histopathologic and molecular features of idiopathic and diabetic nodular mesangial sclerosis in humans.
Michael T Eadon, Sam Lampe, Mirza M Baig, Kimberly S Collins, Ricardo Melo Ferreira, Ying-Hua Cheng

Nephrol Dial Transplant· December 2021

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Integration of spatial and single-cell transcriptomics localizes epithelial cell-immune cross-talk in kidney injury.
Ricardo Melo Ferreira, Angela R Sabo, Seth Winfree, Kimberly S Collins, Danielle Janosevic, Ying-Hua Cheng

JCI Insight· June 2021

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Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline.
Michael J Ferkowicz, Seth Winfree, Angela R Sabo, Malgorzata M Kamocka, Suraj Khochare, Ying-Hua Cheng

Lab Invest· May 2021

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Molecular characterization of the human kidney interstitium in health and disease.
Daria Barwinska, Tarek M El-Achkar, Ricardo Melo Ferreira, Farooq Syed, Ying-Hua Cheng

Sci Adv· February 2021

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The orchestrated cellular and molecular responses of the kidney to endotoxin define a precise sepsis timeline.
Danielle Janosevic, Jered Myslinski, Thomas W McCarthy, Amy Zollman, Farooq Syed, Ying-Hua Cheng

Elife· January 2021

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