Publications by authors named "Yu Toyoshima"

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WormTracer: A precise method for worm posture analysis using temporal continuity.
Koyo Kuze, Ukyo T Tazawa, Karin Suwazono, Chung-Kuan Chen, Yu Toyoshima

J Neurosci Methods· November 2025

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CGC1, a new reference genome for .
Kazuki Ichikawa, Massa J Shoura, Karen L Artiles, Dae-Eun Jeong, Chie Owa, Yu Toyoshima

Genome Res· August 2025

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Dissection of Behavioral Components and the Role of Omega/Delta Turns for the Chemotaxis of C. elegans.
Karin Suwazono, Koyo Kuze, Ukyo T Tazawa, Moon Sun Jang, Hirofumi Kunitomo, Yu Toyoshima

Genes Cells· July 2025

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CGC1, a new reference genome for .
Kazuki Ichikawa, Massa J Shoura, Karen L Artiles, Dae-Eun Jeong, Chie Owa, Yu Toyoshima

bioRxiv· December 2024

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Ensemble dynamics and information flow deduction from whole-brain imaging data.
Yu Toyoshima, Hirofumi Sato, Daiki Nagata, Manami Kanamori, Moon Sun Jang

PLoS Comput Biol· March 2024

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Neuronal sensorimotor integration guiding salt concentration navigation in .
Ayaka Matsumoto, Yu Toyoshima, Chenqi Zhang, Akihiro Isozaki, Keisuke Goda

Proc Natl Acad Sci U S A· January 2024

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WormTensor: a clustering method for time-series whole-brain activity data from C. elegans.
Koki Tsuyuzaki, Kentaro Yamamoto, Yu Toyoshima, Hirofumi Sato, Manami Kanamori

BMC Bioinformatics· June 2023

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Different modes of stimuli delivery elicit changes in glutamate driven, experience-dependent interneuron response in C. elegans.
Llian Mabardi, Hirofumi Sato, Yu Toyoshima, Yuichi Iino, Hirofumi Kunitomo

Neurosci Res· January 2023

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Probabilistic generative modeling and reinforcement learning extract the intrinsic features of animal behavior.
Keita Mori, Naohiro Yamauchi, Haoyu Wang, Ken Sato, Yu Toyoshima

Neural Netw· January 2022

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Neuron ID dataset facilitates neuronal annotation for whole-brain activity imaging of C. elegans.
Yu Toyoshima, Stephen Wu, Manami Kanamori, Hirofumi Sato, Moon Sun Jang

BMC Biol· March 2020

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Multiple sensory neurons mediate starvation-dependent aversive navigation in .
Moon Sun Jang, Yu Toyoshima, Masahiro Tomioka, Hirofumi Kunitomo, Yuichi Iino

Proc Natl Acad Sci U S A· September 2019

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SPF-CellTracker: Tracking Multiple Cells with Strongly-Correlated Moves Using a Spatial Particle Filter.
Osamu Hirose, Shotaro Kawaguchi, Terumasa Tokunaga, Yu Toyoshima, Takayuki Teramoto

IEEE/ACM Trans Comput Biol Bioinform· July 2019

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Modulation of sensory information processing by a neuroglobin in .
Shigekazu Oda, Yu Toyoshima, Mario de Bono

Proc Natl Acad Sci U S A· June 2017

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Glucose Homeostatic Law: Insulin Clearance Predicts the Progression of Glucose Intolerance in Humans.
Kaoru Ohashi, Hisako Komada, Shinsuke Uda, Hiroyuki Kubota, Toshinao Iwaki, Yu Toyoshima

PLoS One· June 2016

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Accurate Automatic Detection of Densely Distributed Cell Nuclei in 3D Space.
Yu Toyoshima, Terumasa Tokunaga, Osamu Hirose, Manami Kanamori, Takayuki Teramoto

PLoS Comput Biol· June 2016

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Reconstruction of insulin signal flow from phosphoproteome and metabolome data.
Katsuyuki Yugi, Hiroyuki Kubota, Yu Toyoshima, Rei Noguchi, Kentaro Kawata

Cell Rep· August 2014

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Automated detection and tracking of many cells by using 4D live-cell imaging data.
Terumasa Tokunaga, Osamu Hirose, Shotaro Kawaguchi, Yu Toyoshima, Takayuki Teramoto

Bioinformatics· June 2014

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The selective control of glycolysis, gluconeogenesis and glycogenesis by temporal insulin patterns.
Rei Noguchi, Hiroyuki Kubota, Katsuyuki Yugi, Yu Toyoshima, Yasunori Komori

Mol Syst Biol· May 2013

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Temporal coding of insulin action through multiplexing of the AKT pathway.
Hiroyuki Kubota, Rei Noguchi, Yu Toyoshima, Yu-Ichi Ozaki, Shinsuke Uda

Mol Cell· June 2012

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Sensitivity control through attenuation of signal transfer efficiency by negative regulation of cellular signalling.
Yu Toyoshima, Hiroaki Kakuda, Kazuhiro A Fujita, Shinsuke Uda, Shinya Kuroda

Nat Commun· March 2012

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Decoupling of receptor and downstream signals in the Akt pathway by its low-pass filter characteristics.
Kazuhiro A Fujita, Yu Toyoshima, Shinsuke Uda, Yu-ichi Ozaki, Hiroyuki Kubota

Sci Signal· July 2010

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