Publications by authors named "Zhizhuo Zhang"

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A two-stage inverse intelligent path optimization model for human-water relationship regulation.
Qingsong Wu, Qiting Zuo, Zhizhuo Zhang, Yihu Ji

Water Res· January 2026

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PRIME: a database for 16S rRNA microbiome data with phenotypic reference and comprehensive metadata.
Zhizhuo Zhang, Hongyu Zhao, Tao Wang

Nucleic Acids Res· October 2025

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An integrated analytical framework for carbon dioxide emission reduction potential in the water production and supply industry in China.
Guodong Jiang, Qiting Zuo, Junxia Ma, Zhizhuo Zhang, Chenguang Zhao

Sci Rep· April 2025

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Technologies for investigating single-molecule chemical reactions.
Chunyan Gao, Qinghua Gao, Cong Zhao, Yani Huo, Zhizhuo Zhang

Natl Sci Rev· August 2024

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LL-37: Structures, Antimicrobial Activity, and Influence on Amyloid-Related Diseases.
Surajit Bhattacharjya, Zhizhuo Zhang, Ayyalusamy Ramamoorthy

Biomolecules· March 2024

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Multitissue H3K27ac profiling of GTEx samples links epigenomic variation to disease.
Lei Hou, Xushen Xiong, Yongjin Park, Carles Boix, Benjamin James, Zhizhuo Zhang

Nat Genet· October 2023

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Real-time dynamic single-molecule protein sequencing on an integrated semiconductor device.
Brian D Reed, Michael J Meyer, Valentin Abramzon, Omer Ad, Omer Ad, Zhizhuo Zhang

Science· October 2022

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Topological Properties, Spectra Analysis, and Consensus Problems for a Class of Network Models Based on m-Fission Operation.
Zhizhuo Zhang, Bo Wu

IEEE Trans Cybern· September 2022

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An Improved Rapidly-Exploring Random Trees Algorithm Combining Parent Point Priority Determination Strategy and Real-Time Optimization Strategy for Path Planning.
Lijing Tian, Zhizhuo Zhang, Change Zheng, Ye Tian, Yuchen Zhao

Sensors (Basel)· October 2021

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High-throughput 5' UTR engineering for enhanced protein production in non-viral gene therapies.
Jicong Cao, Eva Maria Novoa, Zhizhuo Zhang, William C W Chen, Dianbo Liu

Nat Commun· July 2021

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Spectral analysis for weighted iterated q-triangulation networks.
Bo Wu, Zhizhuo Zhang, Weiyi Su

Chaos· December 2019

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Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization.
Dianbo Liu, Jose Davila-Velderrain, Zhizhuo Zhang, Manolis Kellis

Nucleic Acids Res· August 2019

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A high-throughput screening and computation platform for identifying synthetic promoters with enhanced cell-state specificity (SPECS).
Ming-Ru Wu, Lior Nissim, Doron Stupp, Erez Pery, Adina Binder-Nissim, Zhizhuo Zhang

Nat Commun· June 2019

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An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells.
Zhizhuo Zhang, Kern Rei Chng, Shreyas Lingadahalli, Zikai Chen, Mei Hui Liu

Genome Res· February 2019

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Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci.
Vitor Onuchic, Eugene Lurie, Ivenise Carrero, Piotr Pawliczek, Ronak Y Patel, Zhizhuo Zhang

Science· September 2018

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Integrative Analysis of CRISPR/Cas9 Target Sites in the Human HBB Gene.
Yumei Luo, Detu Zhu, Zhizhuo Zhang, Yaoyong Chen, Xiaofang Sun

Biomed Res Int· February 2016

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[Stellate ganglion catheter retention with discontinuous block on efficacy and safety in the treatment of sudden deafness].
Hui Gao, Zhizhuo Zhang, Wenping Guo, Gaifang Zhang

Lin Chuang Er Bi Yan Hou Tou Jing Wai Ke Za Zhi· July 2015

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Integrative analysis of 111 reference human epigenomes.

Nature· February 2015

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The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages.
Chwee Tat Koe, Song Li, Fabrizio Rossi, Jack Jing Lin Wong, Yan Wang, Zhizhuo Zhang

Elife· March 2014

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3D chromosome modeling with semi-definite programming and Hi-C data.
Zhizhuo Zhang, Guoliang Li, Kim-Chuan Toh, Wing-Kin Sung

J Comput Biol· November 2013

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Simultaneously learning DNA motif along with its position and sequence rank preferences through expectation maximization algorithm.
ZhiZhuo Zhang, Cheng Wei Chang, Willy Hugo, Edwin Cheung, Wing-Kin Sung

J Comput Biol· March 2013

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Telomerase directly regulates NF-κB-dependent transcription.
Arkasubhra Ghosh, Gaye Saginc, Shi Chi Leow, Ekta Khattar, Eun Myong Shin, Zhizhuo Zhang

Nat Cell Biol· December 2012

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.
Guoliang Li, Xiaoan Ruan, Raymond K Auerbach, Kuljeet Singh Sandhu, Meizhen Zheng, Jingyao Zhang, Zhizhuo Zhang

Cell· January 2012

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CENTDIST: discovery of co-associated factors by motif distribution.
Zhizhuo Zhang, Cheng Wei Chang, Wan Ling Goh, Wing-Kin Sung, Edwin Cheung

Nucleic Acids Res· July 2011

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