Publications by authors named "Aaron Berlin"

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Simultaneous Identification of Cell of Origin, Translocations, and Hotspot Mutations in Diffuse Large B-Cell Lymphoma Using a Single RNA-Sequencing Assay.
Rory Crotty, Krista Hu, Kristen Stevenson, Maggie Y Pontius, Aliyah R Sohani, Aaron M Berlin

Am J Clin Pathol· April 2021

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PD-L1 neutrophils contribute to injury-induced infection susceptibility.
Ajitha Thanabalasuriar, Abby J Chiang, Christopher Morehouse, Margarita Camara, Shonda Hawkins, Aaron A Berlin

Sci Adv· March 2021

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Risk Assessment for Use of a Porcine Circovirus-Contaminated Reagent in a Barrier Maintained Rodent Colony.
Norman C Peterson, Aaron A Berlin

J Am Assoc Lab Anim Sci· September 2020

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IL-33-ST2 axis regulates myeloid cell differentiation and activation enabling effective club cell regeneration.
Rania Dagher, Alan M Copenhaver, Valerie Besnard, Aaron Berlin, Fatima Hamidi

Nat Commun· September 2020

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Targeting p16-induced senescence prevents cigarette smoke-induced emphysema by promoting IGF1/Akt1 signaling in mice.
Christopher T Cottage, Norman Peterson, Jennifer Kearley, Aaron Berlin, Ximing Xiong

Commun Biol· April 2020

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The application of next-generation sequencing-based molecular diagnostics in endometrial stromal sarcoma.
Xiaodong Li, Mona Anand, Josh D Haimes, Namitha Manoj, Aaron M Berlin

Histopathology· October 2016

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Erratum: Inflammatory triggers associated with exacerbations of COPD orchestrate plasticity of group 2 innate lymphoid cells in the lungs.
Jonathan S Silver, Jennifer Kearley, Alan M Copenhaver, Caroline Sanden, Michiko Mori, Aaron A Berlin

Nat Immunol· July 2016

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Inflammatory triggers associated with exacerbations of COPD orchestrate plasticity of group 2 innate lymphoid cells in the lungs.
Jonathan S Silver, Jennifer Kearley, Alan M Copenhaver, Caroline Sanden, Michiko Mori, Aaron A Berlin

Nat Immunol· June 2016

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Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.
Ingo Braasch, Andrew R Gehrke, Jeramiah J Smith, Kazuhiko Kawasaki, Tereza Manousaki, Aaron M Berlin

Nat Genet· May 2016

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The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.
Ingo Braasch, Andrew R Gehrke, Jeramiah J Smith, Kazuhiko Kawasaki, Tereza Manousaki, Aaron M Berlin

Nat Genet· April 2016

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An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts.
Marc P Hoeppner, Andrew Lundquist, Mono Pirun, Jennifer R S Meadows, Neda Zamani, Aaron Berlin

PLoS One· January 2016

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Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.
Kristian G Andersen, B Jesse Shapiro, Christian B Matranga, Rachel Sealfon, Aaron E Lin, Aaron M Berlin

Cell· August 2015

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Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples.
Christian B Matranga, Kristian G Andersen, Sarah Winnicki, Michele Busby, Adrianne D Gladden, Aaron Berlin

Genome Biol· July 2015

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Genetic and phenotypic intra-species variation in Candida albicans.
Matthew P Hirakawa, Diego A Martinez, Sharadha Sakthikumar, Matthew Z Anderson, Aaron Berlin

Genome Res· March 2015

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Cigarette smoke silences innate lymphoid cell function and facilitates an exacerbated type I interleukin-33-dependent response to infection.
Jennifer Kearley, Jonathan S Silver, Caroline Sanden, Zheng Liu, Aaron A Berlin

Immunity· March 2015

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Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.
Daniel E Neafsey, Robert M Waterhouse, Mohammad R Abai, Sergey S Aganezov, Max A Alekseyev, Aaron Berlin

Science· January 2015

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The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations.
Michael Keane, Thomas Craig, Jessica Alföldi, Aaron M Berlin, Jeremy Johnson

Bioinformatics· December 2014

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The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease.
Xinxia Peng, Jessica Alföldi, Kevin Gori, Amie J Eisfeld, Scott R Tyler, Aaron M Berlin

Nat Biotechnol· December 2014

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The genomic substrate for adaptive radiation in African cichlid fish.
David Brawand, Catherine E Wagner, Yang I Li, Milan Malinsky, Irene Keller, Aaron Berlin

Nature· September 2014

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In vivo multiplexed interrogation of amplified genes identifies GAB2 as an ovarian cancer oncogene.
Gavin P Dunn, Hiu Wing Cheung, Pankaj K Agarwalla, Sapana Thomas, Yulia Zektser, Aaron M Berlin

Proc Natl Acad Sci U S A· January 2014

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Comparative analysis of RNA sequencing methods for degraded or low-input samples.
Xian Adiconis, Diego Borges-Rivera, Rahul Satija, David S DeLuca, Michele A Busby, Aaron M Berlin

Nat Methods· July 2013

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Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification.
Christine M Malboeuf, Xiao Yang, Patrick Charlebois, James Qu, Aaron M Berlin

Nucleic Acids Res· January 2013

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Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.
Viola A Manning, Iovanna Pandelova, Braham Dhillon, Larry J Wilhelm, Stephen B Goodwin, Aaron M Berlin

G3 (Bethesda)· January 2013

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Thymic stromal lymphopoietin is induced by respiratory syncytial virus-infected airway epithelial cells and promotes a type 2 response to infection.
Hai-Chon Lee, Mark B Headley, Yueh-Ming Loo, Aaron Berlin, Michael Gale

J Allergy Clin Immunol· November 2012

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