Publications by authors named "James Qu"

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Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection.
Mark G Young, Timothy J Straub, Colin J Worby, Hayden C Metsky, Andreas Gnirke, James Qu

Nat Commun· November 2024

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Distinct transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection.
Mark G Young, Timothy J Straub, Colin J Worby, Hayden C Metsky, Andreas Gnirke, James Qu

bioRxiv· June 2024

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Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria.
Judith U Oguzie, Brittany A Petros, Paul E Oluniyi, Samar B Mehta, Philomena E Eromon, James Qu

Nat Commun· August 2023

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PBRM1-deficient PBAF complexes target aberrant genomic loci to activate the NF-κB pathway in clear cell renal cell carcinoma.
Xiaosai Yao, Jing Han Hong, Amrita M Nargund, Michelle Shu Wen Ng, Hong Lee Heng, James Qu

Nat Cell Biol· May 2023

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Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance.
Rauf Salamzade, Abigail L Manson, Bruce J Walker, Thea Brennan-Krohn, Colin J Worby, James Qu

Genome Med· April 2022

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Combining genomics and epidemiology to track mumps virus transmission in the United States.
Shirlee Wohl, Hayden C Metsky, Stephen F Schaffner, Anne Piantadosi, Meagan Burns, James Qu

PLoS Biol· February 2020

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Capturing sequence diversity in metagenomes with comprehensive and scalable probe design.
Hayden C Metsky, Katherine J Siddle, Adrianne Gladden-Young, James Qu, David K Yang

Nat Biotechnol· February 2019

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Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018.
Katherine J Siddle, Philomena Eromon, Kayla G Barnes, Samar Mehta, Judith U Oguzie, James Qu

N Engl J Med· November 2018

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Deficiency Drives Enhancer Activation of Oncogenes in Clear Cell Renal Cell Carcinoma.
Xiaosai Yao, Jing Tan, Kevin Junliang Lim, Joanna Koh, Wen Fong Ooi, James Zhengzhong Qu

Cancer Discov· November 2017

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Evidence of Ebola Virus Replication and High Concentration in Semen of a Patient During Recovery.
Kayla G Barnes, Jason Kindrachuk, Aaron E Lin, Shirlee Wohl, James Qu

Clin Infect Dis· October 2017

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Genomic epidemiology reveals multiple introductions of Zika virus into the United States.
Nathan D Grubaugh, Jason T Ladner, Moritz U G Kraemer, Gytis Dudas, Amanda L Tan, James Qu, Joshua Quick, Chalmers Vasquez

Nature· June 2017

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Zika virus evolution and spread in the Americas.
Hayden C Metsky, Christian B Matranga, Shirlee Wohl, Stephen F Schaffner, Catherine A Freije, James Qu, Chalmers Vasquez

Nature· June 2017

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Virus genomes reveal factors that spread and sustained the Ebola epidemic.
Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J Tatem, Guy Baele, James Qu, Joshua Quick

Nature· April 2017

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Unbiased Deep Sequencing of RNA Viruses from Clinical Samples.
Christian B Matranga, Adrianne Gladden-Young, James Qu, Sarah Winnicki, Dolo Nosamiefan

J Vis Exp· July 2016

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Technical Validation of a Next-Generation Sequencing Assay for Detecting Actionable Mutations in Patients with Gastrointestinal Cancer.
Sophie R Wang, Simeen Malik, Iain B Tan, Yang Sun Chan, Qiangze Hoi, James Z Z Qu

J Mol Diagn· May 2016

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Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment.
Francesca Di Giallonardo, Jemma L Geoghegan, Douglas E Docherty, Robert G McLean, Michael C Zody, James Qu

J Virol· January 2016

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Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.
Kristian G Andersen, B Jesse Shapiro, Christian B Matranga, Rachel Sealfon, Aaron E Lin, James Qu

Cell· August 2015

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Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.
Daniel J Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon L M Whitmer, James Qu

Cell· June 2015

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Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak.
Stephen K Gire, Augustine Goba, Kristian G Andersen, Rachel S G Sealfon, Daniel J Park, James Qu

Science· September 2014

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Within-host whole-genome deep sequencing and diversity analysis of human respiratory syncytial virus infection reveals dynamics of genomic diversity in the absence and presence of immune pressure.
Yonatan H Grad, Ruchi Newman, Michael Zody, Xiao Yang, Ryan Murphy, James Qu

J Virol· July 2014

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Noninvasive twin zygosity assessment and aneuploidy detection by maternal plasma DNA sequencing.
Tak Y Leung, James Z Z Qu, Gary J W Liao, Peiyong Jiang, Yvonne K Y Cheng

Prenat Diagn· July 2013

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Noninvasive prenatal determination of twin zygosity by maternal plasma DNA analysis.
James Z Z Qu, Tak Y Leung, Peiyong Jiang, Gary J W Liao, Yvonne K Y Cheng

Clin Chem· February 2013

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Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification.
Christine M Malboeuf, Xiao Yang, Patrick Charlebois, James Qu, Aaron M Berlin

Nucleic Acids Res· January 2013

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De novo assembly of highly diverse viral populations.
Xiao Yang, Patrick Charlebois, Sante Gnerre, Matthew G Coole, Niall J Lennon, James Qu

BMC Genomics· September 2012

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Design and assembly of new nonviral RNAi delivery agents by microwave-assisted quaternization (MAQ) of tertiary amines.
Animesh Ghosh, Koushik Mukherjee, Xinpeng Jiang, Ying Zhou, Joshua McCarroll, James Qu

Bioconjug Chem· September 2010

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