Publications by authors named "Alan Moses"

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Zero-shot segmentation using embeddings from a protein language model identifies functional regions in the human proteome.
Ami G Sangster, Cameron Dufault, Haoning Qu, Denise Le, Julie D Forman-Kay, Alan M Moses

PLoS Comput Biol· November 2025

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AlphaFlex: Ensembles of the human proteome representing disordered regions.
Zi Hao Liu, Oufan Zhang, Stefano De Castro, Kunyang Sun, Hamidreza Ghafouri, Alan M Moses

bioRxiv· November 2025

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Inferring fungal cis-regulatory networks from genome sequences via unsupervised and interpretable representation learning.
Alan M Moses, Jason E Stajich, Audrey P Gasch, David A Knowles

Genetics· September 2025

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Disorder meets its match.
Alan M Moses, Julie D Forman-Kay

Science· July 2025

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An RNA Condensate Model for the Origin of Life.
Jacob L Fine, Alan M Moses

J Mol Biol· June 2025

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The TSC22D, WNK, and NRBP gene families exhibit functional buffering and evolved with Metazoa for cell volume regulation.
Yu-Xi Xiao, Seon Yong Lee, Magali Aguilera-Uribe, Reuben Samson, Aaron Au, Alan M Moses

Cell Rep· July 2024

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Using Dimensionality Reduction to Visualize Phenotypic Changes in High-Throughput Microscopy.
Alex X Lu, Alan M Moses

Methods Mol Biol· May 2024

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Improving the performance of supervised deep learning for regulatory genomics using phylogenetic augmentation.
Andrew G Duncan, Jennifer A Mitchell, Alan M Moses

Bioinformatics· March 2024

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Systematic identification of conditionally folded intrinsically disordered regions by AlphaFold2.
T Reid Alderson, Iva Pritišanac, Đesika Kolarić, Alan M Moses, Julie D Forman-Kay

Proc Natl Acad Sci U S A· October 2023

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A New Phase of Networking: The Molecular Composition and Regulatory Dynamics of Mammalian Stress Granules.
Sean R Millar, Jie Qi Huang, Karl J Schreiber, Yi-Cheng Tsai, Jiyun Won, Alan M Moses

Chem Rev· July 2023

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Evolution of short linear motifs and disordered proteins Topic: yeast as model system to study evolution.
Ami G Sangster, Taraneh Zarin, Alan M Moses

Curr Opin Genet Dev· October 2022

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Developmental dynamics of RNA translation in the human brain.
Erin E Duffy, Benjamin Finander, GiHun Choi, Ava C Carter, Iva Pritisanac, Alan M Moses

Nat Neurosci· October 2022

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Architect: A tool for aiding the reconstruction of high-quality metabolic models through improved enzyme annotation.
Nirvana Nursimulu, Alan M Moses, John Parkinson

PLoS Comput Biol· September 2022

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Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning.
Alex X Lu, Amy X Lu, Iva Pritišanac, Taraneh Zarin, Julie D Forman-Kay, Alan M Moses

PLoS Comput Biol· June 2022

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Stochastic models for single-cell data: Current challenges and the way forward.
Ian S Hsu, Alan M Moses

FEBS J· February 2022

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A recurrent SHANK3 frameshift variant in Autism Spectrum Disorder.
Livia O Loureiro, Jennifer L Howe, Miriam S Reuter, Alana Iaboni, Kristina Calli, Alan Moses

NPJ Genom Med· November 2021

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A functionally divergent intrinsically disordered region underlying the conservation of stochastic signaling.
Ian S Hsu, Bob Strome, Emma Lash, Nicole Robbins, Leah E Cowen, Alan M Moses

PLoS Genet· September 2021

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A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells.
Gurdeep Singh, Shanelle Mullany, Sakthi D Moorthy, Richard Zhang, Tahmid Mehdi, Alan M Moses

Genome Res· April 2021

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Identifying molecular features that are associated with biological function of intrinsically disordered protein regions.
Taraneh Zarin, Bob Strome, Gang Peng, Iva Pritišanac, Julie D Forman-Kay, Alan M Moses

Elife· February 2021

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Risk of severe hypoglycaemia and its impact in type 2 diabetes in DEVOTE.
Simon Heller, Ildiko Lingvay, Steven P Marso, Athena Philis-Tsimikas, Thomas R Pieber, Alan C Moses

Diabetes Obes Metab· December 2020

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Development of a hypoglycaemia risk score to identify high-risk individuals with advanced type 2 diabetes in DEVOTE.
Simon Heller, Ildiko Lingvay, Steven P Marso, Athena Philis-Tsimikas, Thomas R Pieber, Alan C Moses

Diabetes Obes Metab· December 2020

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Phase Separation as a Missing Mechanism for Interpretation of Disease Mutations.
Brian Tsang, Iva Pritišanac, Stephen W Scherer, Alan M Moses, Julie D Forman-Kay

Cell· December 2020

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Whence Blobs? Phylogenetics of functional protein condensates.
Iva Pritišanac, Taraneh Zarin, Julie D Forman-Kay, Alan M Moses

Biochem Soc Trans· October 2020

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Exploring whole-genome duplicate gene retention with complex genetic interaction analysis.
Elena Kuzmin, Benjamin VanderSluis, Alex N Nguyen Ba, Wen Wang, Elizabeth N Koch, Alan Moses

Science· June 2020

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Condensation of Ded1p Promotes a Translational Switch from Housekeeping to Stress Protein Production.
Christiane Iserman, Christine Desroches Altamirano, Ceciel Jegers, Ulrike Friedrich, Taraneh Zarin, Alan M Moses

Cell· May 2020

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