Publications by authors named "Andreas Prlic"

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Development and application of a computable genotype model in the GA4GH Variation Representation Specification.
Wesley Goar, Lawrence Babb, Srikar Chamala, Melissa Cline, Robert R Freimuth

Pac Symp Biocomput· December 2022

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GA4GH: International policies and standards for data sharing across genomic research and healthcare.
Heidi L Rehm, Angela J H Page, Lindsay Smith, Jeremy B Adams, Gil Alterovitz, Andreas Prlic

Cell Genom· November 2021

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SeqRepo: A system for managing local collections of biological sequences.
Reece K Hart, Andreas Prlić

PLoS One· January 2021

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Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm.
Spencer E Bliven, Aleix Lafita, Peter W Rose, Guido Capitani, Andreas Prlić

PLoS Comput Biol· April 2019

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BioJava 5: A community driven open-source bioinformatics library.
Aleix Lafita, Spencer Bliven, Andreas Prlić, Dmytro Guzenko, Peter W Rose

PLoS Comput Biol· February 2019

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RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.
Stephen K Burley, Helen M Berman, Charmi Bhikadiya, Chunxiao Bi, Li Chen, Andreas Prlic

Nucleic Acids Res· January 2019

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hgvs: A Python package for manipulating sequence variants using HGVS nomenclature: 2018 Update.
Meng Wang, Keith M Callenberg, Raymond Dalgleish, Alexandre Fedtsov, Naomi K Fox

Hum Mutat· December 2018

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NGL viewer: web-based molecular graphics for large complexes.
Alexander S Rose, Anthony R Bradley, Yana Valasatava, Jose M Duarte, Andreas Prlic

Bioinformatics· November 2018

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Investigation of protein quaternary structure via stoichiometry and symmetry information.
Selcuk Korkmaz, Jose M Duarte, Andreas Prlić, Dincer Goksuluk, Gokmen Zararsiz

PLoS One· November 2018

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Recon3D enables a three-dimensional view of gene variation in human metabolism.
Elizabeth Brunk, Swagatika Sahoo, Daniel C Zielinski, Ali Altunkaya, Andreas Dräger

Nat Biotechnol· March 2018

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Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.
Gustavo Glusman, Peter W Rose, Andreas Prlić, Jennifer Dougherty, José M Duarte

Genome Med· December 2017

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Impact of genetic variation on three dimensional structure and function of proteins.
Roshni Bhattacharya, Peter W Rose, Stephen K Burley, Andreas Prlić

PLoS One· September 2017

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Towards an efficient compression of 3D coordinates of macromolecular structures.
Yana Valasatava, Anthony R Bradley, Alexander S Rose, Jose M Duarte, Andreas Prlić

PLoS One· August 2017

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BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank.
Jianjiong Gao, Andreas Prlic, Chunxiao Bi, Wolfgang F Bluhm, Dimitris Dimitropoulos

Bioinformatics· July 2017

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MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures.
Anthony R Bradley, Alexander S Rose, Antonín Pavelka, Yana Valasatava, Jose M Duarte

PLoS Comput Biol· June 2017

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The RCSB protein data bank: integrative view of protein, gene and 3D structural information.
Peter W Rose, Andreas Prlić, Ali Altunkaya, Chunxiao Bi, Anthony R Bradley

Nucleic Acids Res· January 2017

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Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
Andreas Prlic, Tara Kalro, Roshni Bhattacharya, Cole Christie, Stephen K Burley

Bioinformatics· December 2016

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Detection of circular permutations within protein structures using CE-CP.
Spencer E Bliven, Philip E Bourne, Andreas Prlić

Bioinformatics· April 2015

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RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.
Gregory B Quinn, Chunxiao Bi, Cole H Christie, Kyle Pang, Andreas Prlić

Bioinformatics· January 2015

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The RCSB Protein Data Bank: views of structural biology for basic and applied research and education.
Peter W Rose, Andreas Prlić, Chunxiao Bi, Wolfgang F Bluhm, Cole H Christie

Nucleic Acids Res· January 2015

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Systematic detection of internal symmetry in proteins using CE-Symm.
Douglas Myers-Turnbull, Spencer E Bliven, Peter W Rose, Zaid K Aziz, Philippe Youkharibache

J Mol Biol· May 2014

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Ten simple rules for the open development of scientific software.
Andreas Prlić, James B Procter

PLoS Comput Biol· May 2013

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Trendspotting in the Protein Data Bank.
Helen M Berman, Buvaneswari Coimbatore Narayanan, Luigi Di Costanzo, Shuchismita Dutta, Sutapa Ghosh

FEBS Lett· April 2013

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The RCSB Protein Data Bank: new resources for research and education.
Peter W Rose, Chunxiao Bi, Wolfgang F Bluhm, Cole H Christie, Dimitris Dimitropoulos, Andreas Prlic

Nucleic Acids Res· January 2013

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BioJava: an open-source framework for bioinformatics in 2012.
Andreas Prlić, Andrew Yates, Spencer E Bliven, Peter W Rose, Julius Jacobsen

Bioinformatics· October 2012

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