Publications by authors named "Dimitris Dimitropoulos"

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Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.
Jasmine Y Young, John D Westbrook, Zukang Feng, Ezra Peisach, Irina Persikova, Dimitris Dimitropoulos

Database (Oxford)· January 2018

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BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank.
Jianjiong Gao, Andreas Prlic, Chunxiao Bi, Wolfgang F Bluhm, Dimitris Dimitropoulos

Bioinformatics· July 2017

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OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.
Jasmine Y Young, John D Westbrook, Zukang Feng, Raul Sala, Ezra Peisach, Dimitris Dimitropoulos

Structure· March 2017

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Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank.
Shuchismita Dutta, Dimitris Dimitropoulos, Zukang Feng, Irina Persikova, Sanchayita Sen

Biopolymers· June 2014

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Chemical annotation of small and peptide-like molecules at the Protein Data Bank.
Jasmine Y Young, Zukang Feng, Dimitris Dimitropoulos, Raul Sala, John Westbrook

Database (Oxford)· March 2014

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The RCSB Protein Data Bank: new resources for research and education.
Peter W Rose, Chunxiao Bi, Wolfgang F Bluhm, Cole H Christie, Dimitris Dimitropoulos

Nucleic Acids Res· January 2013

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Quality assurance for the query and distribution systems of the RCSB Protein Data Bank.
Wolfgang F Bluhm, Bojan Beran, Chunxiao Bi, Dimitris Dimitropoulos, Andreas Prlic

Database (Oxford)· June 2011

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The RCSB Protein Data Bank: redesigned web site and web services.
Peter W Rose, Bojan Beran, Chunxiao Bi, Wolfgang F Bluhm, Dimitris Dimitropoulos

Nucleic Acids Res· January 2011

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Integration of open access literature into the RCSB Protein Data Bank using BioLit.
Andreas Prlić, Marco A Martinez, Dimitris Dimitropoulos, Bojan Beran, Benjamin T Yukich

BMC Bioinformatics· April 2010

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Stochastic differential equation approach for waves in a random medium.
Dimitris Dimitropoulos, Bahram Jalali

Phys Rev E Stat Nonlin Soft Matter Phys· March 2009

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Remediation of the protein data bank archive.
Kim Henrick, Zukang Feng, Wolfgang F Bluhm, Dimitris Dimitropoulos, Jurgen F Doreleijers

Nucleic Acids Res· January 2008

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Using MSDchem to search the PDB ligand dictionary.
Dimitris Dimitropoulos, John Ionides, Kim Henrick

Curr Protoc Bioinformatics· October 2006

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MSDsite: a database search and retrieval system for the analysis and viewing of bound ligands and active sites.
Adel Golovin, Dimitris Dimitropoulos, Tom Oldfield, Abdelkrim Rachedi, Kim Henrick

Proteins· January 2005

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A phase I-II study of docetaxel-ifosfamide-cisplatin (DIP) combination chemotherapy regimen in advanced nonsmall cell lung cancer.
Christos Kosmas, Nicolas B Tsavaris, Thomas Makatsoris, Adimchi Onyenadum, Maria Vadiaka, Dimitris Dimitropoulos

Int J Cancer· March 2002

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