Publications by authors named "Peter W Rose"

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Biomedical knowledge graph-optimized prompt generation for large language models.
Karthik Soman, Peter W Rose, John H Morris, Rabia E Akbas, Brett Smith

Bioinformatics· September 2024

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The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information.
John H Morris, Karthik Soman, Rabia E Akbas, Xiaoyuan Zhou, Brett Smith, Peter W Rose

Bioinformatics· February 2023

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The Pfizer Crystal Structure Database: An essential tool for structure-based design at Pfizer.
Daniel K Gehlhaar, Brock A Luty, Philip P Cheung, Andy H Litman, Robert M Owen, Peter W Rose

J Comput Chem· June 2022

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A biomedical open knowledge network harnesses the power of AI to understand deep human biology.
Sergio E Baranzini, Katy Börner, John Morris, Charlotte A Nelson, Karthik Soman, Peter W Rose

AI Mag· March 2022

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Ten simple rules to cultivate transdisciplinary collaboration in data science.
Faryad Sahneh, Meghan A Balk, Marina Kisley, Chi-Kwan Chan, Mercury Fox, Peter W Rose

PLoS Comput Biol· May 2021

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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Naihui Zhou, Yuxiang Jiang, Timothy R Bergquist, Alexandra J Lee, Balint Z Kacsoh, Peter W Rose

Genome Biol· November 2019

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Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.
Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Sara Brin Rosenthal, Peter W Rose

PLoS Comput Biol· July 2019

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Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm.
Spencer E Bliven, Aleix Lafita, Peter W Rose, Guido Capitani, Andreas Prlić

PLoS Comput Biol· April 2019

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BioJava 5: A community driven open-source bioinformatics library.
Aleix Lafita, Spencer Bliven, Andreas Prlić, Dmytro Guzenko, Peter W Rose

PLoS Comput Biol· February 2019

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NGL viewer: web-based molecular graphics for large complexes.
Alexander S Rose, Anthony R Bradley, Yana Valasatava, Jose M Duarte, Andreas Prlic, Peter W Rose

Bioinformatics· November 2018

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Investigation of protein quaternary structure via stoichiometry and symmetry information.
Selcuk Korkmaz, Jose M Duarte, Andreas Prlić, Dincer Goksuluk, Gokmen Zararsiz, Peter W Rose

PLoS One· November 2018

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GPs' understanding and practice of safety netting for potential cancer presentations: a qualitative study in primary care.
Julie Evans, Sue Ziebland, John I MacArtney, Clare R Bankhead, Peter W Rose

Br J Gen Pract· July 2018

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Responsibility for follow-up during the diagnostic process in primary care: a secondary analysis of International Cancer Benchmarking Partnership data.
Brian D Nicholson, Clare R Goyder, Clare R Bankhead, Berit S Toftegaard, Peter W Rose

Br J Gen Pract· May 2018

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Recon3D enables a three-dimensional view of gene variation in human metabolism.
Elizabeth Brunk, Swagatika Sahoo, Daniel C Zielinski, Ali Altunkaya, Andreas Dräger, Peter W Rose

Nat Biotechnol· March 2018

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Supporting prostate cancer survivors in primary care: Findings from a pilot trial of a nurse-led psycho-educational intervention (PROSPECTIV).
Eila K Watson, Bethany Shinkins, Lauren Matheson, Richeal M Burns, Emma Frith, Peter W Rose

Eur J Oncol Nurs· February 2018

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Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.
Gustavo Glusman, Peter W Rose, Andreas Prlić, Jennifer Dougherty, José M Duarte

Genome Med· December 2017

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Impact of genetic variation on three dimensional structure and function of proteins.
Roshni Bhattacharya, Peter W Rose, Stephen K Burley, Andreas Prlić

PLoS One· September 2017

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Towards an efficient compression of 3D coordinates of macromolecular structures.
Yana Valasatava, Anthony R Bradley, Alexander S Rose, Jose M Duarte, Andreas Prlić, Peter W Rose

PLoS One· August 2017

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Variation in Direct Access to Tests to Investigate Cancer: A Survey of English General Practitioners.
Brian D Nicholson, Jason L Oke, Peter W Rose, David Mant

PLoS One· July 2017

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BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank.
Jianjiong Gao, Andreas Prlic, Chunxiao Bi, Wolfgang F Bluhm, Dimitris Dimitropoulos, Peter W Rose

Bioinformatics· July 2017

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MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures.
Anthony R Bradley, Alexander S Rose, Antonín Pavelka, Yana Valasatava, Jose M Duarte, Peter W Rose

PLoS Comput Biol· June 2017

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The need for scientific software engineering in the pharmaceutical industry.
Brock Luty, Peter W Rose

J Comput Aided Mol Des· March 2017

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The RCSB protein data bank: integrative view of protein, gene and 3D structural information.
Peter W Rose, Andreas Prlić, Ali Altunkaya, Chunxiao Bi, Anthony R Bradley, Alexander S Rose

Nucleic Acids Res· January 2017

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Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
Andreas Prlic, Tara Kalro, Roshni Bhattacharya, Cole Christie, Stephen K Burley, Peter W Rose

Bioinformatics· December 2016

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Symptoms of adult chronic and acute leukaemia before diagnosis: large primary care case-control studies using electronic records.
Elizabeth A Shephard, Richard D Neal, Peter W Rose, Fiona M Walter, Willie Hamilton

Br J Gen Pract· March 2016

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