Publications by authors named "Andreas R Gruber"

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Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC.
Andreas J Gruber, Ralf Schmidt, Souvik Ghosh, Georges Martin, Andreas R Gruber

Genome Biol· March 2018

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A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.
Andreas J Gruber, Ralf Schmidt, Andreas R Gruber, Georges Martin, Souvik Ghosh

Genome Res· August 2016

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An updated human snoRNAome.
Hadi Jorjani, Stephanie Kehr, Dominik J Jedlinski, Rafal Gumienny, Jana Hertel, Andreas R Gruber

Nucleic Acids Res· June 2016

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Roquin recognizes a non-canonical hexaloop structure in the 3'-UTR of Ox40.
Robert Janowski, Gitta A Heinz, Andreas Schlundt, Nina Wommelsdorf, Sven Brenner, Andreas R Gruber

Nat Commun· March 2016

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The ViennaRNA web services.
Andreas R Gruber, Stephan H Bernhart, Ronny Lorenz

Methods Mol Biol· September 2015

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Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data.
Alexander Kanitz, Foivos Gypas, Andreas J Gruber, Andreas R Gruber, Georges Martin

Genome Biol· July 2015

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Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33.
Lars Schönemann, Uwe Kühn, Georges Martin, Peter Schäfer, Andreas R Gruber

Genes Dev· November 2014

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Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells.
Andreas R Gruber, Georges Martin, Philipp Müller, Alexander Schmidt, Andreas J Gruber

Nat Commun· November 2014

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Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors.
Andreas R Gruber, Georges Martin, Walter Keller, Mihaela Zavolan

Wiley Interdiscip Rev RNA· September 2014

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RNA Polymerase III promoter screen uncovers a novel noncoding RNA family conserved in Caenorhabditis and other clade V nematodes.
Andreas R Gruber

Gene· July 2014

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RNAz 2.0: improved noncoding RNA detection.
Andreas R Gruber, Sven Findeiß, Stefan Washietl, Ivo L Hofacker, Peter F Stadler

Pac Symp Biocomput· November 2013

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Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs.
David Zünd, Andreas R Gruber, Mihaela Zavolan, Oliver Mühlemann

Nat Struct Mol Biol· August 2013

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Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing.
Shivendra Kishore, Andreas R Gruber, Dominik J Jedlinski, Afzal P Syed, Hadi Jorjani

Genome Biol· May 2013

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Cleavage factor Im is a key regulator of 3' UTR length.
Andreas R Gruber, Georges Martin, Walter Keller, Mihaiela Zavolan

RNA Biol· December 2012

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Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.
Georges Martin, Andreas R Gruber, Walter Keller, Mihaela Zavolan

Cell Rep· June 2012

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Animal snoRNAs and scaRNAs with exceptional structures.
Manja Marz, Andreas R Gruber, Christian Höner Zu Siederdissen, Fabian Amman, Stefan Badelt

RNA Biol· May 2012

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Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation.
Franz Kratochvill, Christian Machacek, Claus Vogl, Florian Ebner, Vitaly Sedlyarov, Andreas R Gruber

Mol Syst Biol· December 2011

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AREsite: a database for the comprehensive investigation of AU-rich elements.
Andreas R Gruber, Jörg Fallmann, Franz Kratochvill, Pavel Kovarik, Ivo L Hofacker

Nucleic Acids Res· January 2011

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Nematode sbRNAs: homologs of vertebrate Y RNAs.
Ilenia Boria, Andreas R Gruber, Andrea Tanzer, Stephan H Bernhart, Ronny Lorenz

J Mol Evol· April 2010

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RNAalifold: improved consensus structure prediction for RNA alignments.
Stephan H Bernhart, Ivo L Hofacker, Sebastian Will, Andreas R Gruber, Peter F Stadler

BMC Bioinformatics· November 2008

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Arthropod 7SK RNA.
Andreas R Gruber, Carsten Kilgus, Axel Mosig, Ivo L Hofacker, Wolfgang Hennig

Mol Biol Evol· September 2008

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The Vienna RNA websuite.
Andreas R Gruber, Ronny Lorenz, Stephan H Bernhart, Richard Neuböck, Ivo L Hofacker

Nucleic Acids Res· July 2008

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Invertebrate 7SK snRNAs.
Andreas R Gruber, Dorota Koper-Emde, Manja Marz, Hakim Tafer, Stephan Bernhart

J Mol Evol· February 2008

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Strategies for measuring evolutionary conservation of RNA secondary structures.
Andreas R Gruber, Stephan H Bernhart, Ivo L Hofacker, Stefan Washietl

BMC Bioinformatics· February 2008

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Structured RNAs in the ENCODE selected regions of the human genome.
Stefan Washietl, Jakob S Pedersen, Jan O Korbel, Claudia Stocsits, Andreas R Gruber

Genome Res· June 2007

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