Publications by authors named "Andrew Fire"

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From nematode to Nobel: How community-shared resources fueled the rise of as a research organism.
Victor R Ambros, Martin Chalfie, Aric L Daul, Andrew Z Fire, David H Hall

Proc Natl Acad Sci U S A· December 2025

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A default silencing mechanism restrains stress-induced genes in .
Orkan Ilbay, Alejandro Rodriguez Gama, Daniel F Jarosz, Richard I Morimoto, Andrew Fire

bioRxiv· November 2025

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CGC1, a new reference genome for .
Kazuki Ichikawa, Massa J Shoura, Karen L Artiles, Dae-Eun Jeong, Chie Owa, Andrew Z Fire

Genome Res· August 2025

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Nucleosome-mediated conformational switches in micro-eccDNAs.
Sarah Harris, Victor Velasco Berrelleza, William Sandel, Thana Sutthibutpong, Vicki Parikh, Andrew Fire

bioRxiv· June 2025

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A general RNA-templated RNA extension activity of RNA polymerase.
Drew Galls, Andreas U Mueller, Emily Greenwald, Andrew Z Fire

RNA· April 2025

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DragonRNA: Generality of DNA-primed RNA-extension activities by DNA-directed RNA polymerases.
Emily Greenwald, Drew Galls, Joon Park, Nimit Jain, Stephen B Montgomery, Andrew Z Fire

Nucleic Acids Res· March 2025

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CGC1, a new reference genome for .
Kazuki Ichikawa, Massa J Shoura, Karen L Artiles, Dae-Eun Jeong, Chie Owa, Andrew Z Fire

bioRxiv· December 2024

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A genetic and microscopy toolkit for manipulating and monitoring regeneration in Macrostomum lignano.
R Nelson Hall, Hongquan Li, Chew Chai, Sidney Vermeulen, Robin R Bigasin, Andrew Z Fire

Cell Rep· November 2024

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Viroid-like colonists of human microbiomes.
Ivan N Zheludev, Robert C Edgar, Maria Jose Lopez-Galiano, Marcos de la Peña, Artem Babaian, Andrew Z Fire

Cell· November 2024

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Pachytene piRNAs control discrete meiotic events during spermatogenesis and restrict gene expression in space and time.
Jacob Ortega, Lamia Wahba, Jacob Seemann, Shin-Yu Chen, Andrew Z Fire

Sci Adv· October 2024

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Parallel gene size and isoform expansion of ancient neuronal genes.
Matthew J McCoy, Andrew Z Fire

Curr Biol· April 2024

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Viroid-like colonists of human microbiomes.
Ivan N Zheludev, Robert C Edgar, Maria Jose Lopez-Galiano, Marcos de la Peña, Artem Babaian, Andrew Z Fire

bioRxiv· January 2024

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DNA Polymerase Diversity Reveals Multiple Incursions of Polintons During Nematode Evolution.
Dae-Eun Jeong, Sameer Sundrani, Richard Nelson Hall, Mart Krupovic, Eugene V Koonin, Andrew Z Fire

Mol Biol Evol· December 2023

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Ancient origins of complex neuronal genes.
Matthew J McCoy, Andrew Z Fire

bioRxiv· August 2023

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DNA polymerase diversity reveals multiple incursions of Polintons during nematode evolution.
Dae-Eun Jeong, Sameer Sundrani, Richard Nelson Hall, Mart Krupovic, Eugene V Koonin, Andrew Z Fire

bioRxiv· August 2023

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Describing Natural History and Exploring Risk Factors for Kidney Function Decline in Persons With CKD of Uncertain Etiology in Sri Lanka.
Pasan Hewavitharana, Stephen Schensul, Edison Lee, Maria Montez-Rath, Sachintha Senarathne, Andrew Fire

Kidney Int Rep· July 2023

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Combined direct/indirect detection allows identification of DNA termini in diverse sequencing datasets and supports a multiple-initiation-site model for HIV plus-strand synthesis.
William Wang, Karen L Artiles, Shinichi Machida, Monsef Benkirane, Nimit Jain, Andrew Z Fire

bioRxiv· June 2023

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Restriction Endonuclease-Based Modification-Dependent Enrichment (REMoDE) of DNA for Metagenomic Sequencing.
Syed Usman Enam, Joshua L Cherry, Susan R Leonard, Ivan N Zheludev, David J Lipman, Andrew Z Fire

Appl Environ Microbiol· January 2023

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Heterologous reporter expression in the planarian through somatic mRNA transfection.
Richard Nelson Hall, Uri Weill, Leonard Drees, Sergio Leal-Ortiz, Hongquan Li, Andrew Z Fire

Cell Rep Methods· October 2022

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Context-dependent DNA polymerization effects can masquerade as DNA modification signals.
Yusuke Takahashi, Massa Shoura, Andrew Fire, Shinichi Morishita

BMC Genomics· March 2022

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Lymphoid blast transformation in an MPN with BCR-JAK2 treated with ruxolitinib: putative mechanisms of resistance.
Justin Anthony Chen, Yanli Hou, Krishna M Roskin, Daniel A Arber, Charles D Bangs, Andrew Z Fire

Blood Adv· September 2021

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An essential role for the piRNA pathway in regulating the ribosomal RNA pool in C. elegans.
Lamia Wahba, Loren Hansen, Andrew Z Fire

Dev Cell· August 2021

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PLP-1 is essential for germ cell development and germline gene silencing in .
Rajaram Vishnupriya, Linitha Thomas, Lamia Wahba, Andrew Fire, Kuppuswamy Subramaniam

Development· November 2020

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Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome.
Yuri I Wolf, Sukrit Silas, Yongjie Wang, Shuang Wu, Michael Bocek, Andrew Fire

Nat Microbiol· October 2020

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Intron and gene size expansion during nervous system evolution.
Matthew J McCoy, Andrew Z Fire

BMC Genomics· May 2020

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