Publications by authors named "Andrew Torda"

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A universal DNA microarray for rapid fish species authentication.
Patrizia Bade, Sebastian Stix, Kristina Kappel, Jan Fritsche, Ilka Haase, Andrew Torda

Food Chem (Oxf)· June 2025

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Lipidome visualisation, comparison, and analysis in a vector space.
Timur Olzhabaev, Lukas Müller, Daniel Krause, Dominik Schwudke, Andrew Ernest Torda

PLoS Comput Biol· April 2025

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Differentiable partition function calculation for RNA.
Marco C Matthies, Ryan Krueger, Andrew E Torda, Max Ward

Nucleic Acids Res· February 2024

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Conserved intramolecular networks in GDAP1 are closely connected to CMT-linked mutations and protein stability.
Aleksi Sutinen, Dirk Paffenholz, Giang Thi Tuyet Nguyen, Salla Ruskamo, Andrew E Torda

PLoS One· April 2023

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Crystal and solution structures reveal oligomerization of individual capsid homology domains of Drosophila Arc.
Erik I Hallin, Sigurbjörn Markússon, Lev Böttger, Andrew E Torda, Clive R Bramham

PLoS One· October 2021

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Proteins Binding to the Carbohydrate HNK-1: Common Origins?
Gaston Castillo, Ralf Kleene, Melitta Schachner, Gabriele Loers, Andrew E Torda

Int J Mol Sci· July 2021

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Repurposing tRNAs for nonsense suppression.
Suki Albers, Bertrand Beckert, Marco C Matthies, Chandra Sekhar Mandava, Raphael Schuster, Andrew E Torda

Nat Commun· June 2021

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Improving the Numerical Stability of the NAST Force Field for RNA Simulations.
Nils P Petersen, Thomas Ort, Andrew E Torda

J Chem Theory Comput· May 2019

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The Crystal Structure of the C-Terminal Domain of the Salmonella enterica PduO Protein: An Old Fold with a New Heme-Binding Mode.
Darío Ortiz de Orué Lucana, Neal Hickey, Michael Hensel, Johann P Klare, Silvano Geremia, Andrew E Torda

Front Microbiol· July 2016

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Structural and functional evolution of 2',3'-cyclic nucleotide 3'-phosphodiesterase.
Matti Myllykoski, Leonie Seidel, Gopinath Muruganandam, Arne Raasakka, Andrew E Torda

Brain Res· June 2016

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11th German Conference on Chemoinformatics (GCC 2015) : Fulda, Germany. 8-10 November 2015.
Uli Fechner, Chris de Graaf, Andrew E Torda, Stefan Güssregen, Andreas Evers

J Cheminform· April 2016

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The LUX Score: A Metric for Lipidome Homology.
Chakravarthy Marella, Andrew E Torda, Dominik Schwudke

PLoS Comput Biol· March 2016

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Two independently folding units of Plasmodium profilin suggest evolution via gene fusion.
Saligram Prabhakar Bhargav, Juha Vahokoski, Juha Pekka Kallio, Andrew E Torda, Petri Kursula

Cell Mol Life Sci· November 2015

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The extracellular heme-binding protein HbpS from the soil bacterium Streptomyces reticuli is an aquo-cobalamin binder.
Darío Ortiz de Orué Lucana, Sergey N Fedosov, Ina Wedderhoff, Edith N Che, Andrew E Torda

J Biol Chem· December 2014

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Not assessing the efficiency of multiple sequence alignment programs.
Andrew E Torda

Algorithms Mol Biol· July 2014

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RNA secondary structure diagrams for very large molecules: RNAfdl.
Nikolai Hecker, Tim Wiegels, Andrew E Torda

Bioinformatics· November 2013

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Elucidation of haem-binding sites in the actinobacterial protein HbpS.
Andrew E Torda, Matthew R Groves, Ina Wedderhoff, Darío Ortiz de Orué Lucana

FEMS Microbiol Lett· May 2013

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Fast alignment and comparison of RNA structures.
Tim Wiegels, Stefan Bienert, Andrew E Torda

Bioinformatics· March 2013

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d(GGGT) 4 and r(GGGU) 4 are both HIV-1 inhibitors and interleukin-6 receptor aptamers.
Eileen Magbanua, Tijana Zivkovic, Björn Hansen, Niklas Beschorner, Cindy Meyer, Andrew E Torda

RNA Biol· February 2013

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Dynamics in Sequence Space for RNA Secondary Structure Design.
Marco C Matthies, Stefan Bienert, Andrew E Torda

J Chem Theory Comput· October 2012

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RNA secondary structure prediction using a self-consistent mean field approach.
Jens Kleesiek, Andrew E Torda

J Comput Chem· April 2010

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The SALAMI protein structure search server.
Thomas Margraf, Gundolf Schenk, Andrew E Torda

Nucleic Acids Res· July 2009

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Quantitative measure of randomness and order for complete genomes.
Sing-Guan Kong, Wen-Lang Fan, Hong-Da Chen, Jan Wigger, Andrew E Torda

Phys Rev E Stat Nonlin Soft Matter Phys· June 2009

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Protein sequence and structure alignments within one framework.
Gundolf Schenk, Thomas Margraf, Andrew E Torda

Algorithms Mol Biol· April 2008

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Improved Wang-Landau sampling through the use of smoothed potential-energy surfaces.
Phuong H Nguyen, Emil Mittag, Andrew E Torda, Gerhard Stock

J Chem Phys· April 2006

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