Publications by authors named "Benjamin Emert"

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Isolated osseous Rosai-Dorfman disease: a case report and review of literature.
Justin J Sun, Benjamin Emert, Sarah Dry, Fatemeh Abdollahi Mofakham

Skeletal Radiol· December 2025

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Contextual computation by competitive protein dimerization networks.
Jacob Parres-Gold, Matthew Levine, Benjamin Emert, Andrew Stuart, Michael B Elowitz

Cell· April 2025

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Principles of Computation by Competitive Protein Dimerization Networks.
Jacob Parres-Gold, Matthew Levine, Benjamin Emert, Andrew Stuart, Michael B Elowitz

bioRxiv· September 2024

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Genome organization around nuclear speckles drives mRNA splicing efficiency.
Prashant Bhat, Amy Chow, Benjamin Emert, Olivia Ettlin, Sofia A Quinodoz

Nature· May 2024

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Author Correction: Disrupting cellular memory to overcome drug resistance.
Guillaume Harmange, Raúl A Reyes Hueros, Dylan L Schaff, Benjamin Emert, Michael Saint-Antoine

Nat Commun· May 2024

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Retrospective identification of cell-intrinsic factors that mark pluripotency potential in rare somatic cells.
Naveen Jain, Yogesh Goyal, Margaret C Dunagin, Christopher J Cote, Ian A Mellis, Benjamin Emert

Cell Syst· February 2024

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Disrupting cellular memory to overcome drug resistance.
Guillaume Harmange, Raúl A Reyes Hueros, Dylan L Schaff, Benjamin Emert, Michael Saint-Antoine

Nat Commun· November 2023

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Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells.
Yogesh Goyal, Gianna T Busch, Maalavika Pillai, Jingxin Li, Ryan H Boe, Benjamin Emert

Nature· August 2023

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Retrospective identification of intrinsic factors that mark pluripotency potential in rare somatic cells.
Naveen Jain, Yogesh Goyal, Margaret C Dunagin, Christopher J Cote, Ian A Mellis, Benjamin Emert

bioRxiv· February 2023

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3D genome organization around nuclear speckles drives mRNA splicing efficiency.
Prashant Bhat, Amy Chow, Benjamin Emert, Olivia Ettlin, Sofia A Quinodoz

bioRxiv· January 2023

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ClampFISH 2.0 enables rapid, scalable amplified RNA detection in situ.
Ian Dardani, Benjamin L Emert, Yogesh Goyal, Connie L Jiang, Amanpreet Kaur

Nat Methods· November 2022

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Cell type determination for cardiac differentiation occurs soon after seeding of human-induced pluripotent stem cells.
Connie L Jiang, Yogesh Goyal, Naveen Jain, Qiaohong Wang, Rachel E Truitt, Benjamin Emert

Genome Biol· April 2022

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Multiplexed detection of SARS-CoV-2 genomic and subgenomic RNA using hybridization.
Kofi K Acheampong, Dylan L Schaff, Benjamin L Emert, Jonathan Lake, Sam Reffsin

bioRxiv· August 2021

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Variability within rare cell states enables multiple paths toward drug resistance.
Benjamin L Emert, Christopher J Cote, Eduardo A Torre, Ian P Dardani, Connie L Jiang

Nat Biotechnol· July 2021

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Subcellular Detection of SARS-CoV-2 RNA in Human Tissue Reveals Distinct Localization in Alveolar Type 2 Pneumocytes and Alveolar Macrophages.
Kofi K Acheampong, Dylan L Schaff, Benjamin L Emert, Jonathan Lake, Sam Reffsin

mBio· February 2021

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Genetic screening for single-cell variability modulators driving therapy resistance.
Eduardo A Torre, Eri Arai, Sareh Bayatpour, Connie L Jiang, Lauren E Beck, Benjamin L Emert

Nat Genet· January 2021

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Gene regulation gravitates toward either addition or multiplication when combining the effects of two signals.
Eric M Sanford, Benjamin L Emert, Allison Coté, Arjun Raj

Elife· December 2020

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Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors.
Sydney M Shaffer, Benjamin L Emert, Raúl A Reyes Hueros, Christopher Cote, Guillaume Harmange

Cell· August 2020

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Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer.
Lea Schuh, Michael Saint-Antoine, Eric M Sanford, Benjamin L Emert, Abhyudai Singh

Cell Syst· April 2020

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Amendments: Author Correction: ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification.
Sara H Rouhanifard, Ian A Mellis, Margaret Dunagin, Sareh Bayatpour, Connie L Jiang, Benjamin Emert

Nat Biotechnol· January 2019

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ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification.
Sara H Rouhanifard, Ian A Mellis, Margaret Dunagin, Sareh Bayatpour, Connie L Jiang, Benjamin Emert

Nat Biotechnol· November 2018

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Corrigendum: Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance.
Sydney M Shaffer, Margaret C Dunagin, Stefan R Torborg, Eduardo A Torre, Benjamin Emert

Nature· March 2018

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Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance.
Sydney M Shaffer, Margaret C Dunagin, Stefan R Torborg, Eduardo A Torre, Benjamin Emert

Nature· June 2017

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Genetic and environmental control of host-gut microbiota interactions.
Elin Org, Brian W Parks, Jong Wha J Joo, Benjamin Emert, William Schwartzman

Genome Res· October 2015

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HDL inhibits the effects of oxidized phospholipids on endothelial cell gene expression via multiple mechanisms.
Benjamin Emert, Yehudit Hasin-Brumshtein, James R Springstead, Ladan Vakili, Judith A Berliner

J Lipid Res· August 2014

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