Publications by authors named "Benjamin Parks"

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Scalable high-performance single cell data analysis with BPCells.
Benjamin Parks, William Greenleaf

bioRxiv· April 2025

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Single-molecule states link transcription factor binding to gene expression.
Benjamin R Doughty, Michaela M Hinks, Julia M Schaepe, Georgi K Marinov, Abby R Thurm, Benjamin E Parks

Nature· December 2024

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Publisher Correction: PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape.
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua McKeever, Olubusayo Bolonduro, Benjamin Parks

Nat Immunol· June 2024

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PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape.
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua McKeever, Olubusayo Bolonduro, Benjamin Parks

Nat Immunol· May 2024

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Single-molecule chromatin configurations link transcription factor binding to expression in human cells.
Benjamin R Doughty, Michaela M Hinks, Julia M Schaepe, Georgi K Marinov, Abby R Thurm, Benjamin E Parks

bioRxiv· February 2024

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NEAT-seq: simultaneous profiling of intra-nuclear proteins, chromatin accessibility and gene expression in single cells.
Amy F Chen, Benjamin Parks, Arwa S Kathiria, Benjamin Ober-Reynolds, Jorg J Goronzy

Nat Methods· May 2022

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The standardization of clinical ethics consultation and technique's "long encirclement" of humanity: a response to Brummett and Muaygil.
Benjamin N Parks, Jordan Mason

Philos Ethics Humanit Med· October 2021

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Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19.
Aaron J Wilk, Madeline J Lee, Bei Wei, Benjamin Parks, Ruoxi Pi

J Exp Med· August 2021

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Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia.
Jeffrey M Granja, Sandy Klemm, Lisa M McGinnis, Arwa S Kathiria, Anja Mezger, Benjamin Parks

Nat Biotechnol· December 2019

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