Publications by authors named "William Greenleaf"

Claim this Profile
F
Functional Mapping of Epigenomic Regulators Uncovers Coordinated Tumor Suppression by the HBO1 and MLL1 Complexes.
Yuning J Tang, Haiqing Xu, Nicholas W Hughes, Paloma Ruiz, Samuel H Kim, William J Greenleaf

Cancer Discov· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Compact RNA sensors for increasingly complex functions of multiple inputs.
Christian A Choe, Johan O L Andreasson, Feriel Melaine, Wipapat Kladwang, Michelle J Wu, William J Greenleaf

Nat Chem· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Age-related microbiome metabolites alter RNA splicing and chromatin accessibility in the brain.
Meenakshi Chakraborty, Sophia M Shi, Imani E Porter, Daniel J Richard, Georgi K Marinov, William J Greenleaf

bioRxiv· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Polyclonal origins of human premalignant colorectal lesions.
Debra Van Egeren, Ryan O Schenck, Aziz Khan, Aaron M Horning, Shanlan Mo, William J Greenleaf

Nature· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Polyclonal origins of human premalignant colorectal lesions.
Debra Van Egeren, Ryan O Schenck, Aziz Khan, Aaron M Horning, Shanlan Mo, William J Greenleaf

bioRxiv· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Thermodynamic principles link in vitro transcription factor affinities to single-molecule chromatin states in cells.
Julia M Schaepe, Torbjörn Fries, Benjamin R Doughty, Vivekanandan Ramalingam, Betty B Liu, William J Greenleaf

Cell· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Thymic epithelial cells amplify epigenetic noise to promote immune tolerance.
Noah Gamble, Jason A Caldwell, Joshua McKeever, Caroline Kaiser, Alexandra Bradu, William J Greenleaf

Nature· October 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Innate immune molecular landscape following controlled human influenza virus infection.
William Thistlethwaite, Sindhu Vangeti, Wan-Sze Cheng, Pankaj Agarwal, Antonio Cappuccio, William J Greenleaf

Cell Rep· October 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Deep learning the dynamic regulatory sequence code of cardiac organoid differentiation.
Eyal Metzl-Raz, Ryan Zhao, Salil Deshpande, Jackson Powell, Elizabeth G Porter, William J Greenleaf

bioRxiv· October 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Dissecting the epigenome dynamics in human immune cells upon viral and chemical exposure by multimodal single-cell profiling.
Irem B Gündüz, Bei Wei, Derek C Chen, Wenliang Wang, Manoj Hariharan, William J Greenleaf

bioRxiv· September 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Sensitive, direct detection of non-coding off-target base editor unwinding and editing in primary cells.
Tong Wang, Selin Jessa, Georgi K Marinov, Sandy Klemm, Anshul Kundaje, William J Greenleaf

bioRxiv· September 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Single-cell spatial mapping reveals alteration of tissue microenvironment during early colorectal cancer.
Tuhin K Guha, Edward D Esplin, Aaron M Horning, Roxanne Chiu, Kristina Paul, William J Greenleaf

bioRxiv· August 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Cancer cell phagocytosis induces an anti-inflammatory gene regulatory program in macrophages.
Catherine R Zhang, Lei Xiong, Mingxin Gu, Christine Y Yeh, Livnat Jerby, William J Greenleaf

bioRxiv· August 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
An emergent disease-associated motor neuron state precedes cell death in a mouse model of ALS.
Olivia Gautier, Jacob A Blum, Thao P Nguyen, Sandy Klemm, Mai Yamakawa, William J Greenleaf

bioRxiv· August 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
High-throughput DNA melt measurements enable improved models of DNA folding thermodynamics.
Yuxi Ke, Eesha Sharma, Hannah K Wayment-Steele, Winston R Becker, Anthony Ho, William J Greenleaf

Nat Commun· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Cell type-specific purifying selection of synonymous mitochondrial DNA variation.
Caleb A Lareau, Patrick Maschmeyer, Yajie Yin, Jacob C Gutierrez, Ryan S Dhindsa, William J Greenleaf

Proc Natl Acad Sci U S A· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
An automated ATAC-seq method reveals sequence determinants of transcription factor dose response in the open chromatin.
Betty B Liu, Masaru Shimasawa, Sidney Vermeulen, Samuel H Kim, Nika Iremadze, William J Greenleaf

bioRxiv· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
An updated compendium and reevaluation of the evidence for nuclear transcription factor occupancy over the mitochondrial genome.
Georgi K Marinov, Vivekanandan Ramalingam, William J Greenleaf, Anshul Kundaje

PLoS One· May 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Three-dimensional genome landscape of primary human cancers.
Kathryn E Yost, Yanding Zhao, King L Hung, Kaiyuan Zhu, Duo Xu, William J Greenleaf

Nat Genet· May 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Mapping the Simultaneously Accessible and ssDNA-Containing Genome With KAS-ATAC Sequencing.
Georgi K Marinov, William J Greenleaf

Bio Protoc· May 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Scalable high-performance single cell data analysis with BPCells.
Benjamin Parks, William Greenleaf

bioRxiv· April 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Author Correction: Global loss of promoter-enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis.
Yizhou Zhu, Hayan Lee, Shannon White, Annika K Weimer, Emma Monte, William J Greenleaf

Nat Cancer· February 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
MorPhiC Consortium: towards functional characterization of all human genes.
Mazhar Adli, Laralynne Przybyla, Tony Burdett, Paul W Burridge, Pilar Cacheiro, William J Greenleaf

Nature· February 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants.
Anusri Pampari, Anna Shcherbina, Evgeny Z Kvon, Michael Kosicki, Surag Nair, William James Greenleaf

bioRxiv· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Thermodynamic principles link transcription factor affinities to single-molecule chromatin states in cells.
Julia M Schaepe, Torbjörn Fries, Benjamin R Doughty, Olivia J Crocker, Michaela M Hinks, William J Greenleaf

bioRxiv· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis