Publications by authors named "Benjamin Pullman"

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plantMASST - Community-driven chemotaxonomic digitization of plants.
Paulo Wender P Gomes, Helena Mannochio-Russo, Robin Schmid, Simone Zuffa, Tito Damiani, Benjamin S Pullman

bioRxiv· May 2024

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microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender P Gomes, Andres M Caraballo-Rodriguez, Benjamin S Pullman

Nat Microbiol· February 2024

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A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data.
Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender P Gomes, Andres M Caraballo-Rodriguez, Benjamin S Pullman

Res Sq· August 2023

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Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.
Eric W Deutsch, Juan Antonio Vizcaíno, Andrew R Jones, Pierre-Alain Binz, Henry Lam, Benjamin Pullman

J Proteome Res· February 2023

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The ProteomeXchange consortium at 10 years: 2023 update.
Eric W Deutsch, Nuno Bandeira, Yasset Perez-Riverol, Vagisha Sharma, Jeremy J Carver, Benjamin S Pullman

Nucleic Acids Res· January 2023

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Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.
Richard D LeDuc, Eric W Deutsch, Pierre-Alain Binz, Ryan T Fellers, Anthony J Cesnik, Benjamin Pullman

J Proteome Res· April 2022

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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.
Daniel Petras, Vanessa V Phelan, Deepa Acharya, Andrew E Allen, Allegra T Aron, Benjamin Pullman

Nat Methods· February 2022

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Universal Spectrum Identifier for mass spectra.
Eric W Deutsch, Yasset Perez-Riverol, Jeremy Carver, Shin Kawano, Luis Mendoza, Benjamin Pullman

Nat Methods· July 2021

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MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.
Meena Choi, Jeremy Carver, Cristina Chiva, Manuel Tzouros, Ting Huang, Benjamin Pullman

Nat Methods· October 2020

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The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.
Eric W Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Perez-Riverol, Jeremy J Carver, Benjamin S Pullman

Nucleic Acids Res· January 2020

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ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets.
Benjamin S Pullman, Julie Wertz, Jeremy Carver, Nuno Bandeira

J Proteome Res· December 2018

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Assembling the Community-Scale Discoverable Human Proteome.
Mingxun Wang, Jian Wang, Jeremy Carver, Benjamin S Pullman, Seong Won Cha

Cell Syst· October 2018

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Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-time bisulfite sequencing (SMRT-BS).
Yao Yang, Robert Sebra, Benjamin S Pullman, Wanqiong Qiao, Inga Peter

BMC Genomics· May 2015

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