Publications by authors named "Bertrand Denis"

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Nanopore adaptive sampling accurately detects nucleotide variants and improves the characterization of large-scale rearrangement for the diagnosis of cancer predisposition.
Sandy Chevrier, Corentin Richard, Marie Mille, Denis Bertrand, Romain Boidot

Clin Transl Med· January 2025

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Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline.
Camille Aucouturier, Nicolas Soirat, Laurent Castéra, Denis Bertrand, Alexandre Atkinson

BMC Genomics· September 2024

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Integrative genomic analyses of European intrahepatic cholangiocarcinoma: Novel ROS1 fusion gene and PBX1 as prognostic marker.
Patrick S Plum, Timo Hess, Denis Bertrand, Isabelle Morgenstern, Oscar Velazquez Camacho

Clin Transl Med· June 2024

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Clinical evaluation of a low-coverage whole-genome test for detecting homologous recombination deficiency in ovarian cancer.
Romain Boidot, Michael G B Blum, Marie-Pierre Wissler, Céline Gottin, Jiri Ruzicka, Denis Bertrand

Eur J Cancer· May 2024

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[Heart failure treatments].
Sophie Balesdent, Marion Lobbe, Laurent Lechowski, Bertrand Denis

Soins Gerontol· November 2023

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Real-life impact of respiratory panel PCR assay on antibiotic prescription in geriatric acute care in the pre-COVID-19 era.
Agathe Lissajoux, Bertrand Denis, Elyanne Gault, Marion Pépin, Marie Herr

Infect Dis Now· October 2023

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[Frequency of incidentalomas on computed tomography scans in the hospitalised elderly].
Louise Sindzingre, Albane de Witasse-Thézy, Anita Chevallier, Bertrand Denis, Laurent Lechowski

Geriatr Psychol Neuropsychiatr Vieil· September 2023

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Long-term ecological and evolutionary dynamics in the gut microbiomes of carbapenemase-producing Enterobacteriaceae colonized subjects.
Jonathan T L Kang, Jonathan J Y Teo, Denis Bertrand, Amanda Ng, Aarthi Ravikrishnan

Nat Microbiol· October 2022

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Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians.
Jean-Sebastien Gounot, Minghao Chia, Denis Bertrand, Woei-Yuh Saw, Aarthi Ravikrishnan

Nat Commun· October 2022

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Genomic patterns of divergence in the early and late steps of speciation of the deep-sea vent thermophilic worms of the genus Alvinella.
Camille Thomas-Bulle, Denis Bertrand, Niranjan Nagarajan, Richard R Copley, Erwan Corre

BMC Ecol Evol· September 2022

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Genome Alert!: A standardized procedure for genomic variant reinterpretation and automated gene-phenotype reassessment in clinical routine.
Kevin Yauy, François Lecoquierre, Stéphanie Baert-Desurmont, Detlef Trost, Aicha Boughalem, Denis Bertrand

Genet Med· June 2022

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Critical Assessment of Metagenome Interpretation: the second round of challenges.
Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Denis Bertrand

Nat Methods· April 2022

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Stool metagenome analysis of patients with Klebsiella pneumoniae liver abscess and their domestic partners.
James S Molton, I Russel Lee, Denis Bertrand, Ying Ding, Shirin Kalimuddin

Int J Infect Dis· June 2021

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Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads.
Seth Commichaux, Kiran Javkar, Padmini Ramachandran, Niranjan Nagarajan, Denis Bertrand

BMC Genomics· May 2021

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Household transmission of carbapenemase-producing Enterobacteriaceae: a prospective cohort study.
Kalisvar Marimuthu, Yin Mo, Moi Lin Ling, Anastasia Hernandez-Koutoucheva, Shannon N Fenlon, Denis Bertrand

J Antimicrob Chemother· April 2021

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Duration of Carbapenemase-Producing Enterobacteriaceae Carriage in Hospital Patients.
Yin Mo, Anastasia Hernandez-Koutoucheva, Patrick Musicha, Denis Bertrand, David Lye

Emerg Infect Dis· September 2020

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Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment.
Kern Rei Chng, Chenhao Li, Denis Bertrand, Amanda Hui Qi Ng, Junmei Samantha Kwah

Nat Med· June 2020

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Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.
Denis Bertrand, Jim Shaw, Manesh Kalathiyappan, Amanda Hui Qi Ng, M Senthil Kumar

Nat Biotechnol· August 2019

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Predicting Cancer Drug Response using a Recommender System.
Chayaporn Suphavilai, Denis Bertrand, Niranjan Nagarajan

Bioinformatics· November 2018

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Comprehensive Characterization of Cancer Driver Genes and Mutations.
Matthew H Bailey, Collin Tokheim, Eduard Porta-Pardo, Sohini Sengupta, Denis Bertrand

Cell· August 2018

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Immunological corollary of the pulmonary mycobiome in bronchiectasis: the CAMEB study.
Micheál Mac Aogáin, Ravishankar Chandrasekaran, Albert Yick Hou Lim, Teck Boon Low, Gan Liang Tan, Denis Bertrand

Eur Respir J· July 2018

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Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics.
Li Ding, Matthew H Bailey, Eduard Porta-Pardo, Vesteinn Thorsson, Antonio Colaprico, Denis Bertrand

Cell· April 2018

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A MinION™-based pipeline for fast and cost-effective DNA barcoding.
Amrita Srivathsan, Bilgenur Baloğlu, Wendy Wang, Wei X Tan, Denis Bertrand

Mol Ecol Resour· April 2018

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ConsensusDriver Improves upon Individual Algorithms for Predicting Driver Alterations in Different Cancer Types and Individual Patients.
Denis Bertrand, Sibyl Drissler, Burton K Chia, Jia Yu Koh, Chenhao Li

Cancer Res· January 2018

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