Publications by authors named "Brian Yee"

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The IFIT2-IFIT3 antiviral complex targets short 5' untranslated regions on viral mRNAs for translation inhibition.
Dustin R Glasner, Candace Todd, Brian Cook, Agustina D'Urso, Shivani Khosla, Brian A Yee

Nat Microbiol· November 2025

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KIF5A binds RNA to orchestrate synaptic mRNA localization and stress granules in ALS.
Phuong Le, Neeraj K Lal, Shuhao Xu, Sara Mumford, Megan Huang, Brian Yee

bioRxiv· November 2025

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Dosage-sensitive autoregulation promotes cardiomyocyte differentiation by maturing the transcriptome.
Mengmeng Huang, Feria A Ladha, Yunxia Wang, Michael A Trembley, Hui-Min Yin, Brian A Yee

bioRxiv· November 2025

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Genome-Wide Interrogation of SARS-CoV-2 RNA-Protein Interactions Uncovers Hidden Regulatory Sites.
Joy S Xiang, Karen X Zhao, Laliv Tadri, Kurt Tamaru, Brian A Yee

bioRxiv· May 2025

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Short 5' UTRs serve as a marker for viral mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex.
Dustin R Glasner, Candace Todd, Brian Cook, Agustina D'Urso, Shivani Khosla, Brian A Yee

bioRxiv· February 2025

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LARP6 regulates the mRNA translation of fibrogenic genes in liver fibrosis.
Hyun Young Kim, Orel Mizrahi, Wonseok Lee, Sara B Rosenthal, Cuijuan Han, Brian A Yee

bioRxiv· January 2025

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Long-read Ribo-STAMP simultaneously measures transcription and translation with isoform resolution.
Pratibha Jagannatha, Alexandra T Tankka, Daniel A Lorenz, Tao Yu, Brian A Yee

Genome Res· November 2024

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High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues.
Qishan Liang, Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A Yee

Nat Commun· August 2024

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Autism-associated CHD8 controls reactive gliosis and neuroinflammation via remodeling chromatin in astrocytes.
Platon Megagiannis, Yuan Mei, Rachel E Yan, Lin Yuan, Jonathan J Wilde, Brian A Yee

Cell Rep· August 2024

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Epistatic interactions between NMD and TRP53 control progenitor cell maintenance and brain size.
Lin Lin, Jingrong Zhao, Naoto Kubota, Zhelin Li, Yi-Li Lam, Brian A Yee

Neuron· July 2024

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Protocol to process crosslinking and immunoprecipitation data into annotated binding sites.
Shuhao Xu, Grady G Nguyen, Jack T Naritomi, Hema M Kopalle, Brian A Yee

STAR Protoc· June 2024

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A phage nucleus-associated RNA-binding protein is required for jumbo phage infection.
Eray Enustun, Emily G Armbruster, Jina Lee, Sitao Zhang, Brian A Yee

Nucleic Acids Res· May 2024

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Transcriptome regulation by PARP13 in basal and antiviral states in human cells.
Veronica F Busa, Yoshinari Ando, Stefan Aigner, Brian A Yee, Gene W Yeo

iScience· April 2024

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Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery.
Ze Liu, Justin Wang, Yi Shi, Brian A Yee, Markus Terrey

Nucleic Acids Res· October 2023

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FLARE: a fast and flexible workflow for identifying RNA editing foci.
Eric Kofman, Brian Yee, Hugo C Medina-Munoz, Gene W Yeo

BMC Bioinformatics· October 2023

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A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer.
Corina E Antal, Tae Gyu Oh, Stefan Aigner, En-Ching Luo, Brian A Yee

Nat Commun· September 2023

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A phage nucleus-associated RNA-binding protein is required for jumbo phage infection.
Eray Enustun, Emily G Armbruster, Jina Lee, Sitao Zhang, Brian A Yee

bioRxiv· September 2023

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Pyruvate Kinase M (PKM) binds ribosomes in a poly-ADP ribosylation dependent manner to induce translational stalling.
Nevraj S Kejiou, Lena Ilan, Stefan Aigner, Enching Luo, Tori Tonn, Brian A Yee

Nucleic Acids Res· July 2023

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In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target.
Ana Vujovic, Laura de Rooij, Ava Keyvani Chahi, He Tian Chen, Brian A Yee

Blood Cancer Discov· May 2023

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RNA binding protein DDX5 restricts RORγt T suppressor function to promote intestine inflammation.
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Brian A Yee

Sci Adv· February 2023

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Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death.
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas V Chembazhi, Katelyn Toohill, Brian A Yee, Sayeepriyadarshini Anakk

Nat Commun· February 2023

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RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.
Louis Philip Benoit Bouvrette, Xiaofeng Wang, Jonathan Boulais, Jian Kong, Easin Uddin Syed, Brian Yee

Nucleic Acids Res· January 2023

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Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP.
Daniel A Lorenz, Hsuan-Lin Her, Kylie A Shen, Katie Rothamel, Kasey R Hutt, Brian A Yee

Nat Methods· January 2023

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Author Correction: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma.
Michelle M Kameda-Smith, Helen Zhu, En-Ching Luo, Yujin Suk, Agata Xella, Brian Yee

Nat Commun· January 2023

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Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma.
Michelle M Kameda-Smith, Helen Zhu, En-Ching Luo, Yujin Suk, Agata Xella, Brian Yee

Nat Commun· December 2022

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