Publications by authors named "Chee Hong Wong"

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Extrachromosomal DNA associates with nuclear condensates and reorganizes chromatin structures to enhance oncogenic transcription.
Aziz Taghbalout, Chia-Hao Tung, Patricia A Clow, Harianto Tjong, Ping Wang, Chee Hong Wong

Cancer Cell· December 2025

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Extrachromosomal DNA Associates with Nuclear Condensates and Reorganizes Chromatin Structures to Enhance Oncogenic Transcription.
Aziz Taghbalout, Chia-Hao Tung, Patricia A Clow, Ping Wang, Harianto Tjong, Chee Hong Wong

bioRxiv· September 2024

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ChIATAC is an efficient strategy for multi-omics mapping of 3D epigenomes from low-cell inputs.
Haoxi Chai, Harianto Tjong, Peng Li, Wei Liao, Ping Wang, Chee Hong Wong

Nat Commun· January 2023

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Reduced subgenomic RNA expression is a molecular indicator of asymptomatic SARS-CoV-2 infection.
Chee Hong Wong, Chew Yee Ngan, Rachel L Goldfeder, Jennifer Idol, Chris Kuhlberg

Commun Med (Lond)· September 2021

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Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription.
Yanfen Zhu, Amit D Gujar, Chee-Hong Wong, Harianto Tjong, Chew Yee Ngan

Cancer Cell· May 2021

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Chromatin interaction analyses elucidate the roles of PRC2-bound silencers in mouse development.
Chew Yee Ngan, Chee Hong Wong, Harianto Tjong, Wenbo Wang, Rachel L Goldfeder

Nat Genet· March 2020

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Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance.
Jessica A Bertolini, Rebecca Favaro, Yanfen Zhu, Miriam Pagin, Chew Yee Ngan, Chee Hong Wong

Cell Stem Cell· March 2019

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Complex Microbiome in Brain Abscess Revealed by Whole-Genome Culture-Independent and Culture-Based Sequencing.
Jyun-Hong Lin, Zong-Yen Wu, Liang Gong, Chee-Hong Wong, Wen-Cheng Chao

J Clin Med· March 2019

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Ultra-long Read Sequencing for Whole Genomic DNA Analysis.
Liang Gong, Chee-Hong Wong, Jennifer Idol, Chew Yee Ngan, Chia-Lin Wei

J Vis Exp· March 2019

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Linked-read Sequencing Analysis Reveals Tumor-specific Genome Variation Landscapes in Neurofibromatosis Type 2 (NF2) Patients.
Daniel S Roberts, Rahul Maurya, Yuka Takemon, Jeremie Vitte, Liang Gong, Chee-Hong Wong

Otol Neurotol· February 2019

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Multiplex chromatin interactions with single-molecule precision.
Meizhen Zheng, Simon Zhongyuan Tian, Daniel Capurso, Minji Kim, Rahul Maurya, Chee Hong Wong

Nature· February 2019

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Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions.
Charles Bachy, Christina J Charlesworth, Amy M Chan, Jan F Finke, Chee-Hong Wong

Environ Microbiol· August 2018

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Picky comprehensively detects high-resolution structural variants in nanopore long reads.
Liang Gong, Chee-Hong Wong, Wei-Chung Cheng, Harianto Tjong, Francesca Menghi

Nat Methods· June 2018

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Culture-independent analysis of liver abscess using nanopore sequencing.
Liang Gong, Yao-Ting Huang, Chee-Hong Wong, Wen-Cheng Chao, Zong-Yen Wu

PLoS One· February 2018

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Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla.
Peter H Waltman, Jian Guo, Emily Nahas Reistetter, Samuel Purvine, Charles K Ansong, Chee-Hong Wong

PLoS One· July 2017

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A statistical method for detecting differentially expressed SNVs based on next-generation RNA-seq data.
Rong Fu, Pei Wang, Weiping Ma, Ayumu Taguchi, Chee-Hong Wong

Biometrics· March 2017

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Integrative epigenomic analysis reveals unique epigenetic signatures involved in unipotency of mouse female germline stem cells.
Xiao-Li Zhang, Jun Wu, Jian Wang, Tingting Shen, Hua Li, Chee-Hong Wong

Genome Biol· July 2016

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Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants.
Marijke J van Baren, Charles Bachy, Emily Nahas Reistetter, Samuel O Purvine, Jane Grimwood, Chee-Hong Wong

BMC Genomics· March 2016

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Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae.
Chew Yee Ngan, Chee-Hong Wong, Cindy Choi, Yuko Yoshinaga, Katherine Louie

Nat Plants· July 2015

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Molecular portraits of epithelial, mesenchymal, and hybrid States in lung adenocarcinoma and their relevance to survival.
Mark J Schliekelman, Ayumu Taguchi, Jun Zhu, Xudong Dai, Jaime Rodriguez, Chee-Hong Wong

Cancer Res· May 2015

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Marine algae and land plants share conserved phytochrome signaling systems.
Deqiang Duanmu, Charles Bachy, Sebastian Sudek, Chee-Hong Wong, Valeria Jiménez

Proc Natl Acad Sci U S A· November 2014

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A search for novel cancer/testis antigens in lung cancer identifies VCX/Y genes, expanding the repertoire of potential immunotherapeutic targets.
Ayumu Taguchi, Allen D Taylor, Jaime Rodriguez, Müge Celiktaş, Hui Liu, Chee-Hong Wong

Cancer Res· September 2014

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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.
Alexandre Fort, Kosuke Hashimoto, Daisuke Yamada, Md Salimullah, Chaman A Keya, Chee-Hong Wong

Nat Genet· June 2014

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Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.
Yubo Zhang, Chee-Hong Wong, Ramon Y Birnbaum, Guoliang Li, Rebecca Favaro, Eleanor Wong

Nature· December 2013

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ST2 as a marker for risk of therapy-resistant graft-versus-host disease and death.
Mark T Vander Lugt, Thomas M Braun, Samir Hanash, Jerome Ritz, Vincent T Ho, Chee-Hong Wong

N Engl J Med· August 2013

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