Publications by authors named "Chet Birger"

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Proteogenomic data and resources for pan-cancer analysis.
Yize Li, Yongchao Dou, Felipe Da Veiga Leprevost, Yifat Geffen, Anna P Calinawan, Chet Birger

Cancer Cell· August 2023

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Pan-cancer proteogenomics connects oncogenic drivers to functional states.
Yize Li, Eduard Porta-Pardo, Collin Tokheim, Matthew H Bailey, Tomer M Yaron, Chet Birger

Cell· August 2023

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Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation.
Yifat Geffen, Shankara Anand, Yo Akiyama, Tomer M Yaron, Yizhe Song, Chet Birger

Cell· August 2023

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PANOPLY: a cloud-based platform for automated and reproducible proteogenomic data analysis.
D R Mani, Myranda Maynard, Ramani Kothadia, Karsten Krug, Karen E Christianson, Chet Birger

Nat Methods· June 2021

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Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy.
Karsten Krug, Eric J Jaehnig, Shankha Satpathy, Lili Blumenberg, Alla Karpova, Chet Birger

Cell· November 2020

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Genetic and transcriptional evolution alters cancer cell line drug response.
Uri Ben-David, Benjamin Siranosian, Gavin Ha, Helen Tang, Yaara Oren, Chet Birger

Nature· August 2018

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Toil enables reproducible, open source, big biomedical data analyses.
John Vivian, Arjun Arkal Rao, Frank Austin Nothaft, Christopher Ketchum, Joel Armstrong, Chet Birger

Nat Biotechnol· April 2017

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Characterizing genomic alterations in cancer by complementary functional associations.
Jong Wook Kim, Olga B Botvinnik, Omar Abudayyeh, Chet Birger, Joseph Rosenbluh

Nat Biotechnol· May 2016

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The Molecular Signatures Database (MSigDB) hallmark gene set collection.
Arthur Liberzon, Chet Birger, Helga Thorvaldsdóttir, Mahmoud Ghandi, Jill P Mesirov

Cell Syst· December 2015

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