Publications by authors named "Clara Fuchsman"

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Marine Community Metabolomes in the Eastern Tropical North Pacific Oxygen Deficient Zone Reveal Glycine Betaine as a Metabolic Link Between Prochlorococcus and SAR11.
Natalie A Kellogg, Clara A Fuchsman, Laura T Carlson, Robert M Morris, Anitra E Ingalls

Environ Microbiol· August 2025

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Quantitative microbial taxonomy across particle size, depth, and oxygen concentration.
Paulina Huanca-Valenzuela, Clara A Fuchsman, Benjamin J Tully, Jason B Sylvan, Jacob A Cram

Front Microbiol· May 2025

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Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay.
Clara A Fuchsman, Jacob A Cram, Marcel Huntemann, Robert Riley, Brian Foster

Microbiol Resour Announc· April 2025

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SAR11 ecotypes across ocean basins change with depth due to changes in light and oxygen.
Matthew D Hays, Clara A Fuchsman

ISME J· January 2025

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Microbial diversity and abundance vary along salinity, oxygen, and particle size gradients in the Chesapeake Bay.
Jacob A Cram, Ashley Hollins, Alexandra J McCarty, Grace Martinez, Minming Cui, Clara A Fuchsman

Environ Microbiol· January 2024

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Increased cyanophage infection at the bottom of the euphotic zone, especially in the fall.
Clara A Fuchsman, Matthew D Hays

Environ Microbiol· December 2023

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Associations between picocyanobacterial ecotypes and cyanophage host genes across ocean basins and depth.
Clara A Fuchsman, David Garcia Prieto, Matthew D Hays, Jacob A Cram

PeerJ· March 2023

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An analysis of protists in Pacific oxygen deficient zones: implications for Prochlorococcus and N -producing bacteria.
Clara A Fuchsman, Luca Cherubini, Matthew D Hays

Environ Microbiol· April 2022

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Cyanophage host-derived genes reflect contrasting selective pressures with depth in the oxic and anoxic water column of the Eastern Tropical North Pacific.
Clara A Fuchsman, Michael C G Carlson, David Garcia Prieto, Matthew D Hays, Gabrielle Rocap

Environ Microbiol· June 2021

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Using modern low-oxygen marine ecosystems to understand the nitrogen cycle of the Paleo- and Mesoproterozoic oceans.
Clara A Fuchsman, Eva E Stüeken

Environ Microbiol· June 2021

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Cyanobacteria and cyanophage contributions to carbon and nitrogen cycling in an oligotrophic oxygen-deficient zone.
Clara A Fuchsman, Hilary I Palevsky, Brittany Widner, Megan Duffy, Michael C G Carlson

ISME J· November 2019

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Complete arsenic-based respiratory cycle in the marine microbial communities of pelagic oxygen-deficient zones.
Jaclyn K Saunders, Clara A Fuchsman, Cedar McKay, Gabrielle Rocap

Proc Natl Acad Sci U S A· May 2019

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Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes.
Nathan A Ahlgren, Clara A Fuchsman, Gabrielle Rocap, Jed A Fuhrman

ISME J· March 2019

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Utilization of urea and cyanate in waters overlying and within the eastern tropical north Pacific oxygen deficient zone.
Brittany Widner, Clara A Fuchsman, Bonnie X Chang, Gabrielle Rocap, Margaret R Mulholland

FEMS Microbiol Ecol· October 2018

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Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone.
Clara A Fuchsman, Allan H Devol, Jaclyn K Saunders, Cedar McKay, Gabrielle Rocap

Front Microbiol· December 2017

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Effect of the environment on horizontal gene transfer between bacteria and archaea.
Clara A Fuchsman, Roy Eric Collins, Gabrielle Rocap, William J Brazelton

PeerJ· September 2017

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Stimulation of autotrophic denitrification by intrusions of the bosporus plume into the anoxic black sea.
Clara A Fuchsman, James W Murray, James T Staley

Front Microbiol· October 2012

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Concurrent activity of anammox and denitrifying bacteria in the Black Sea.
John B Kirkpatrick, Clara A Fuchsman, Evgeniy Yakushev, James T Staley, James W Murray

Front Microbiol· October 2012

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Free-living and aggregate-associated Planctomycetes in the Black Sea.
Clara A Fuchsman, James T Staley, Brian B Oakley, John B Kirkpatrick, James W Murray

FEMS Microbiol Ecol· May 2012

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Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone.
Clara A Fuchsman, John B Kirkpatrick, William J Brazelton, James W Murray, James T Staley

FEMS Microbiol Ecol· December 2011

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Analysis of nitrite reductase (nirK and nirS) genes and cultivation reveal depauperate community of denitrifying bacteria in the Black Sea suboxic zone.
Brian B Oakley, Christopher A Francis, Kathryn J Roberts, Clara A Fuchsman, S Srinivasan

Environ Microbiol· January 2007

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Whole-genome reciprocal BLAST analysis reveals that planctomycetes do not share an unusually large number of genes with Eukarya and Archaea.
Clara A Fuchsman, Gabrielle Rocap

Appl Environ Microbiol· October 2006

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Diversity and distribution of Planctomycetes and related bacteria in the suboxic zone of the Black Sea.
John Kirkpatrick, Brian Oakley, Clara Fuchsman, Sujatha Srinivasan, James T Staley

Appl Environ Microbiol· April 2006

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