Publications by authors named "Dan MacLean"

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The Magnaporthe oryzae effector Pwl2 alters HIPP43 localization to suppress host immunity.
Vincent M Were, Xia Yan, Andrew J Foster, Jan Sklenar, Thorsten Langner, Dan Maclean

Plant Cell· June 2025

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Complexity of the lichen symbiosis revealed by metagenome and transcriptome analysis of Xanthoria parietina.
Gulnara Tagirdzhanova, Klara Scharnagl, Neha Sahu, Xia Yan, Angus Bucknell, Dan MacLean

Curr Biol· February 2025

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The phosphorylation landscape of infection-related development by the rice blast fungus.
Neftaly Cruz-Mireles, Miriam Osés-Ruiz, Paul Derbyshire, Clara Jégousse, Lauren S Ryder, Dan MacLean

Cell· May 2024

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The transcriptional landscape of plant infection by the rice blast fungus Magnaporthe oryzae reveals distinct families of temporally co-regulated and structurally conserved effectors.
Xia Yan, Bozeng Tang, Lauren S Ryder, Dan MacLean, Vincent M Were

Plant Cell· April 2023

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An Improved Assembly of the Ac2V Genome Reveals the Expansion of the "CCG" Class of Effectors.
Oliver J Furzer, Volkan Cevik, Sebastian Fairhead, Kate Bailey, Amey Redkar, Dan MacLean

Mol Plant Microbe Interact· January 2022

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Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors.
Pingtao Ding, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolas Manosalva Perez, Wenbin Guo, Dan MacLean

J Exp Bot· December 2021

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Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network.
Lida Derevnina, Mauricio P Contreras, Hiroaki Adachi, Jessica Upson, Angel Vergara Cruces, Dan MacLean

PLoS Biol· August 2021

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Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks.
Ruth Kristianingsih, Dan MacLean

BMC Bioinformatics· July 2021

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High-resolution expression profiling of selected gene sets during plant immune activation.
Pingtao Ding, Bruno Pok Man Ngou, Oliver J Furzer, Toshiyuki Sakai, Ram Krishna Shrestha, Dan MacLean

Plant Biotechnol J· July 2020

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Protein engineering expands the effector recognition profile of a rice NLR immune receptor.
Juan Carlos De la Concepcion, Marina Franceschetti, Dan MacLean, Ryohei Terauchi, Sophien Kamoun

Elife· September 2019

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The use of quantitative imaging to investigate regulators of membrane trafficking in Arabidopsis stomatal closure.
Gildas Bourdais, Deirdre H McLachlan, Lydia M Rickett, Ji Zhou, Agnieszka Siwoszek, Dan MacLean

Traffic· February 2019

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Using CRISPR/Cas9 genome editing in tomato to create a gibberellin-responsive dominant dwarf DELLA allele.
Laurence Tomlinson, Ying Yang, Ryan Emenecker, Matthew Smoker, Jodie Taylor, Dan MacLean

Plant Biotechnol J· January 2019

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A workflow for simplified analysis of ATAC-cap-seq data in R.
Ram Krishna Shrestha, Pingtao Ding, Jonathan D G Jones, Dan MacLean

Gigascience· July 2018

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The ash dieback invasion of Europe was founded by two genetically divergent individuals.
Mark McMullan, Maryam Rafiqi, Gemy Kaithakottil, Bernardo J Clavijo, Lorelei Bilham, Dan MaClean

Nat Ecol Evol· June 2018

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An automated quantitative image analysis tool for the identification of microtubule patterns in plants.
Christine Faulkner, Ji Zhou, Alexandre Evrard, Gildas Bourdais, Dan MacLean

Traffic· October 2017

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The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1.
Daniel Couto, Roda Niebergall, Xiangxiu Liang, Christoph A Bücherl, Jan Sklenar, Dan Maclean

PLoS Pathog· August 2016

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A pigeonpea gene confers resistance to Asian soybean rust in soybean.
Cintia G Kawashima, Gustavo Augusto Guimarães, Sônia Regina Nogueira, Dan MacLean, Doug R Cook

Nat Biotechnol· June 2016

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blastjs: a BLAST+ wrapper for Node.js.
Martin Page, Dan MacLean, Christian Schudoma

BMC Res Notes· February 2016

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bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby.
Graham J Etherington, Ricardo H Ramirez-Gonzalez, Dan MacLean

Bioinformatics· August 2015

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Lessons from Fraxinus, a crowd-sourced citizen science game in genomics.
Ghanasyam Rallapalli, , Diane Go Saunders, Kentaro Yoshida, Anne Edwards, Dan MacLean

Elife· July 2015

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Physical and chemical properties of pomegranate fruit accessions from Croatia.
Mira Radunić, Maja Jukić Špika, Smiljana Goreta Ban, Jelena Gadže, Juan Carlos Díaz-Pérez, Dan MacLean

Food Chem· June 2015

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Using 2k + 2 bubble searches to find single nucleotide polymorphisms in k-mer graphs.
Reda Younsi, Dan MacLean

Bioinformatics· March 2015

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An open science peer review oath.
Jelena Aleksic, Adrian Alexa, Teresa K Attwood, Neil Chue Hong, Martin Dahlö, Dan MacLean

F1000Res· February 2015

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Mapping mutations in plant genomes with the user-friendly web application CandiSNP.
Graham J Etherington, Jacqueline Monaghan, Cyril Zipfel, Dan MacLean

Plant Methods· January 2015

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The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover.
Jacqueline Monaghan, Susanne Matschi, Oluwaseyi Shorinola, Hanna Rovenich, Alexandra Matei, Dan MacLean

Cell Host Microbe· November 2014

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