Publications by authors named "Daniel M Ibrahim"

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A missing enzyme-rescue metabolite as cause of a rare skeletal dysplasia.
Jean Jacobs, Hristiana Lyubenova, Sven Potelle, Johannes Kopp, Isabelle Gerin, Daniel M Ibrahim

Nature· October 2025

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Conservation of regulatory elements with highly diverged sequences across large evolutionary distances.
Mai H Q Phan, Tobias Zehnder, Fiona Puntieri, Andreas Magg, Blanka Majchrzycka, Daniel M Ibrahim

Nat Genet· June 2025

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Evolution and function of chromatin domains across the tree of life.
Michael-Florian Szalay, Blanka Majchrzycka, Ivana Jerković, Giacomo Cavalli, Daniel M Ibrahim

Nat Struct Mol Biol· December 2024

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Enhancer contacts during embryonic development show diverse interaction modes and modest yet significant increases upon gene activation.
Daniel M Ibrahim

Nat Genet· April 2024

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Single-cell, whole-embryo phenotyping of mammalian developmental disorders.
Xingfan Huang, Jana Henck, Chengxiang Qiu, Varun K A Sreenivasan, Saranya Balachandran, Daniel M Ibrahim

Nature· November 2023

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When 3D genome changes cause disease: the impact of structural variations in congenital disease and cancer.
Joachim Weischenfeldt, Daniel M Ibrahim

Curr Opin Genet Dev· June 2023

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Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes.
Alessa R Ringel, Quentin Szabo, Andrea M Chiariello, Konrad Chudzik, Robert Schöpflin, Daniel M Ibrahim

Cell· September 2022

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Three-dimensional chromatin in disease: What holds us together and what drives us apart?
Daniel M Ibrahim, Stefan Mundlos

Curr Opin Cell Biol· June 2020

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Unblending of Transcriptional Condensates in Human Repeat Expansion Disease.
Shaon Basu, Sebastian D Mackowiak, Henri Niskanen, Dora Knezevic, Vahid Asimi, Daniel M Ibrahim

Cell· May 2020

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The role of 3D chromatin domains in gene regulation: a multi-facetted view on genome organization.
Daniel M Ibrahim, Stefan Mundlos

Curr Opin Genet Dev· April 2020

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Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture.
Alexandra Despang, Robert Schöpflin, Martin Franke, Salaheddine Ali, Ivana Jerković, Daniel M Ibrahim

Nat Genet· August 2019

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Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations.
Katerina Kraft, Andreas Magg, Verena Heinrich, Christina Riemenschneider, Robert Schöpflin, Daniel M Ibrahim

Nat Cell Biol· March 2019

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The single-cell transcriptional landscape of mammalian organogenesis.
Junyue Cao, Malte Spielmann, Xiaojie Qiu, Xingfan Huang, Daniel M Ibrahim

Nature· February 2019

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Mutation in precludes transcription factor cooperativity and causes congenital hypoventilation in humans and mice.
Luis Rodrigo Hernandez-Miranda, Daniel M Ibrahim, Pierre-Louis Ruffault, Madeleine Larrosa, Kira Balueva

Proc Natl Acad Sci U S A· December 2018

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Odd skipped-related 1 identifies a population of embryonic fibro-adipogenic progenitors regulating myogenesis during limb development.
Pedro Vallecillo-García, Mickael Orgeur, Sophie Vom Hofe-Schneider, Jürgen Stumm, Verena Kappert, Daniel M Ibrahim

Nat Commun· October 2017

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Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding.
Guillaume Andrey, Robert Schöpflin, Ivana Jerković, Verena Heinrich, Daniel M Ibrahim

Genome Res· February 2017

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Genome-Wide Binding of Posterior HOXA/D Transcription Factors Reveals Subgrouping and Association with CTCF.
Ivana Jerković, Daniel M Ibrahim, Guillaume Andrey, Stefan Haas, Peter Hansen

PLoS Genet· January 2017

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Formation of new chromatin domains determines pathogenicity of genomic duplications.
Martin Franke, Daniel M Ibrahim, Guillaume Andrey, Wibke Schwarzer, Verena Heinrich

Nature· October 2016

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A homozygous HOXD13 missense mutation causes a severe form of synpolydactyly with metacarpal to carpal transformation.
Daniel M Ibrahim, Naeimeh Tayebi, Alexej Knaus, Asita C Stiege, Afsaneh Sahebzamani

Am J Med Genet A· March 2016

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Saturation analysis of ChIP-seq data for reproducible identification of binding peaks.
Peter Hansen, Jochen Hecht, Daniel M Ibrahim, Alexander Krannich, Matthias Truss

Genome Res· September 2015

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Deletions, Inversions, Duplications: Engineering of Structural Variants using CRISPR/Cas in Mice.
Katerina Kraft, Sinje Geuer, Anja J Will, Wing Lee Chan, Christina Paliou, Daniel M Ibrahim

Cell Rep· February 2015

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Distinct global shifts in genomic binding profiles of limb malformation-associated HOXD13 mutations.
Daniel M Ibrahim, Peter Hansen, Christian Rödelsperger, Asita C Stiege, Sandra C Doelken

Genome Res· December 2013

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Microarray comparison of anterior and posterior Drosophila wing imaginal disc cells identifies novel wing genes.
Daniel M Ibrahim, Brian Biehs, Thomas B Kornberg, Ansgar Klebes

G3 (Bethesda)· August 2013

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Homeotic arm-to-leg transformation associated with genomic rearrangements at the PITX1 locus.
Malte Spielmann, Francesco Brancati, Peter M Krawitz, Peter N Robinson, Daniel M Ibrahim

Am J Hum Genet· October 2012

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