Publications by authors named "Daniel Rokhsar"

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Population Genomics Reveals Local Adaptation Related to Temperature Variation in Two Stream Frog Species: Implications for Vulnerability to Climate Warming.
Brenna R Forester, Amanda S Cicchino, Alisha A Shah, Austin B Mudd, Eric C Anderson, Daniel Rokhsar

Mol Ecol· December 2025

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The genomic origin of the unique chaetognath body plan.
Laura Piovani, Daria Gavriouchkina, Elise Parey, Luke A Sarre, Katja T C A Peijnenburg, Daniel S Rokhsar

Nature· September 2025

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A single-cell atlas of the bobtail squid visual and nervous system highlights molecular principles of convergent evolution.
Daria Gavriouchkina, Yongkai Tan, Elise Parey, Fabienne Ziadi-Künzli, Yuko Hasegawa, Daniel S Rokhsar

Nat Ecol Evol· July 2025

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Chromosome-level genome assemblies of 2 hemichordates provide new insights into deuterostome origin and chromosome evolution.
Che-Yi Lin, Ferdinand Marlétaz, Alberto Pérez-Posada, Pedro Manuel Martínez-García, Siegfried Schloissnig, Daniel S Rokhsar

PLoS Biol· June 2024

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The hagfish genome and the evolution of vertebrates.
Ferdinand Marlétaz, Nataliya Timoshevskaya, Vladimir A Timoshevskiy, Elise Parey, Oleg Simakov, Daniel S Rokhsar

Nature· March 2024

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Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs.
Jessen V Bredeson, Austin B Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Daniel S Rokhsar

Nat Commun· January 2024

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Tracing cancer evolution and heterogeneity using Hi-C.
Dan Daniel Erdmann-Pham, Sanjit Singh Batra, Timothy K Turkalo, James Durbin, Marco Blanchette, Daniel S Rokhsar

Nat Commun· November 2023

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Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources.
Morag E Ferguson, Rodney P Eyles, Ana Luísa Garcia-Oliveira, Fortunus Kapinga, Esther A Masumba, Daniel S Rokhsar

Front Plant Sci· November 2023

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Cephalopod behaviour.
Tamar Gutnick, Daniel S Rokhsar, Michael J Kuba

Curr Biol· October 2023

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Creation of an albino squid line by CRISPR-Cas9 and its application for in vivo functional imaging of neural activity.
Namrata Ahuja, Ernie Hwaun, Judit R Pungor, Ruhina Rafiq, Sal Nemes, Daniel S Rokhsar

Curr Biol· July 2023

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Ancient gene linkages support ctenophores as sister to other animals.
Darrin T Schultz, Steven H D Haddock, Jessen V Bredeson, Richard E Green, Oleg Simakov, Daniel S Rokhsar

Nature· June 2023

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Transposon signatures of allopolyploid genome evolution.
Adam M Session, Daniel S Rokhsar

Nat Commun· June 2023

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The little skate genome and the evolutionary emergence of wing-like fins.
Ferdinand Marlétaz, Elisa de la Calle-Mustienes, Rafael D Acemel, Christina Paliou, Silvia Naranjo, Daniel S Rokhsar

Nature· April 2023

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The hagfish genome and the evolution of vertebrates.
Ferdinand Marlétaz, Nataliya Timoshevskaya, Vladimir Timoshevskiy, Oleg Simakov, Elise Parey, Daniel S Rokhsar

bioRxiv· April 2023

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CRISPR-Cas9-mediated knockout of and in cassava attenuates toxic cyanogen production.
Michael A Gomez, Kodiak C Berkoff, Baljeet K Gill, Anthony T Iavarone, Samantha E Lieberman, Daniel S Rokhsar

Front Plant Sci· March 2023

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Current status and impending progress for cassava structural genomics.
Jessica B Lyons, Jessen V Bredeson, Ben N Mansfeld, Guillaume Jean Bauchet, Jeffrey Berry, Daniel S Rokhsar

Plant Mol Biol· June 2022

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Correction to: Current status and impending progress for cassava structural genomics.
Jessica B Lyons, Jessen V Bredeson, Ben N Mansfeld, Guillaume Jean Bauchet, Jeffrey Berry, Daniel S Rokhsar

Plant Mol Biol· June 2022

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Genome and transcriptome mechanisms driving cephalopod evolution.
Caroline B Albertin, Sofia Medina-Ruiz, Therese Mitros, Hannah Schmidbaur, Gustavo Sanchez, Daniel S Rokhsar

Nat Commun· May 2022

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Chromosome evolution and the genetic basis of agronomically important traits in greater yam.
Jessen V Bredeson, Jessica B Lyons, Ibukun O Oniyinde, Nneka R Okereke, Olufisayo Kolade, Daniel S Rokhsar

Nat Commun· April 2022

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Deeply conserved synteny and the evolution of metazoan chromosomes.
Oleg Simakov, Jessen Bredeson, Kodiak Berkoff, Ferdinand Marletaz, Therese Mitros, Daniel S Rokhsar

Sci Adv· February 2022

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Analysis of meiosis in reveals plasticity in homolog pairing and synapsis in the nematode lineage.
Regina Rillo-Bohn, Renzo Adilardi, Therese Mitros, Barış Avşaroğlu, Lewis Stevens, Daniel S Rokhsar

Elife· August 2021

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Diversification of mandarin citrus by hybrid speciation and apomixis.
Guohong Albert Wu, Chikatoshi Sugimoto, Hideyasu Kinjo, Chika Azama, Fumimasa Mitsube, Daniel S Rokhsar

Nat Commun· July 2021

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Plant Pan-Genomics Comes of Age.
Li Lei, Eugene Goltsman, David Goodstein, Guohong Albert Wu, Daniel S Rokhsar

Annu Rev Plant Biol· June 2021

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Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida).
Gustavo Sanchez, Fernando Á Fernández-Álvarez, Morag Taite, Chikatoshi Sugimoto, Jeffrey Jolly, Daniel S Rokhsar

Commun Biol· June 2021

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Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.
John T Lovell, Alice H MacQueen, Sujan Mamidi, Jason Bonnette, Jerry Jenkins, Daniel S Rokhsar

Nature· February 2021

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