Publications by authors named "David Goodstein"

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Comparative Analyses of Four Reference Genomes Reveal Exceptional Diversity and Weak Linked Selection in the Yellow Monkeyflower (Mimulus guttatus) Complex.
John T Lovell, Rachel Walstead, Amelia Lawrence, Evan Stark-Dykema, Matthew C Farnitano, David Goodstein

Mol Ecol Resour· November 2025

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Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae.
Zoltán Füssy, Robert H Lampe, Kevin R Arrigo, Kerrie Barry, Margaret M Brisbin, David M Goodstein

Nat Commun· September 2025

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Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean.
Mary Jane C Espina, John T Lovell, Jerry Jenkins, Shengqiang Shu, Avinash Sreedasyam, David Goodstein

Plant J· November 2024

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Genome resources for three modern cotton lines guide future breeding efforts.
Avinash Sreedasyam, John T Lovell, Sujan Mamidi, Sameer Khanal, Jerry W Jenkins, David Goodstein

Nat Plants· June 2024

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A view of the pan-genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.).
Qihua Liang, María Muñoz-Amatriaín, Shengqiang Shu, Sassoum Lo, Xinyi Wu, David M Goodstein

Plant Genome· March 2024

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The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum.
Li Lei, Sean P Gordon, Lifeng Liu, Nir Sade, John T Lovell, David M Goodstein

G3 (Bethesda)· December 2023

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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.
Avinash Sreedasyam, Christopher Plott, Md Shakhawat Hossain, John T Lovell, Jane Grimwood, David Goodstein

Nucleic Acids Res· September 2023

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Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium.
Virginia T Scarlett, John T Lovell, Mingqin Shao, Jeremy Phillips, Shengqiang Shu, David M Goodstein

Genetics· February 2023

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The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory.
Rory J Craig, Sean D Gallaher, Shengqiang Shu, Patrice A Salomé, Jerry W Jenkins, David M Goodstein

Plant Cell· February 2023

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GENESPACE tracks regions of interest and gene copy number variation across multiple genomes.
John T Lovell, Avinash Sreedasyam, M Eric Schranz, Melissa Wilson, Joseph W Carlson, David M Goodstein

Elife· September 2022

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Chromosome evolution and the genetic basis of agronomically important traits in greater yam.
Jessen V Bredeson, Jessica B Lyons, Ibukun O Oniyinde, Nneka R Okereke, Olufisayo Kolade, David Goodstein

Nat Commun· April 2022

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Plant Pan-Genomics Comes of Age.
Li Lei, Eugene Goltsman, David Goodstein, Guohong Albert Wu, Daniel S Rokhsar

Annu Rev Plant Biol· June 2021

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Genome sequence and evolution of Betula platyphylla.
Su Chen, Yucheng Wang, Lili Yu, Tao Zheng, Sui Wang, David M Goodstein

Hortic Res· February 2021

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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.
Sean P Gordon, Bruno Contreras-Moreira, Joshua J Levy, Armin Djamei, Angelika Czedik-Eysenberg, David Goodstein

Nat Commun· July 2020

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Construction and comparison of three reference-quality genome assemblies for soybean.
Babu Valliyodan, Steven B Cannon, Philipp E Bayer, Shengqiang Shu, Anne V Brown, David M Goodstein

Plant J· December 2019

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The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.
Daniel Lang, Kristian K Ullrich, Florent Murat, Jörg Fuchs, Jerry Jenkins, David Goodstein

Plant J· February 2018

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The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.
Xiaohan Yang, Rongbin Hu, Hengfu Yin, Jerry Jenkins, Shengqiang Shu, David M Goodstein

Nat Commun· December 2017

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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Sean P Gordon, Bruno Contreras-Moreira, Daniel P Woods, David L Des Marais, Diane Burgess, David Goodstein

Nat Commun· December 2017

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JBrowse: a dynamic web platform for genome visualization and analysis.
Robert Buels, Eric Yao, Colin M Diesh, Richard D Hayes, Monica Munoz-Torres, David M Goodstein

Genome Biol· April 2016

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The BioMart community portal: an innovative alternative to large, centralized data repositories.
Damian Smedley, Syed Haider, Steffen Durinck, Luca Pandini, Paolo Provero, David Goodstein

Nucleic Acids Res· July 2015

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The Chlamydomonas genome project: a decade on.
Ian K Blaby, Crysten E Blaby-Haas, Nicolas Tourasse, Erik F Y Hom, David Lopez, David Goodstein

Trends Plant Sci· October 2014

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A reference genome for common bean and genome-wide analysis of dual domestications.
Jeremy Schmutz, Phillip E McClean, Sujan Mamidi, G Albert Wu, Steven B Cannon, David M Goodstein

Nat Genet· July 2014

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The genome of Eucalyptus grandis.
Alexander A Myburg, Dario Grattapaglia, Gerald A Tuskan, Uffe Hellsten, Richard D Hayes, David M Goodstein

Nature· June 2014

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The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.

Nat Genet· May 2013

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The genome portal of the Department of Energy Joint Genome Institute.
Igor V Grigoriev, Henrik Nordberg, Igor Shabalov, Andrea Aerts, Mike Cantor, David Goodstein

Nucleic Acids Res· January 2012

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