Publications by authors named "Eldon Emberly"

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Neural basis of cognitive control signals in anterior cingulate cortex during delay discounting.
Jeremy K Seamans, Eldon Emberly, Shelby White, Mitchell Morningstar, David Linsenbardt

bioRxiv· June 2025

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Inference of transcriptional regulation from STARR-seq data.
Amin Safaeesirat, Hoda Taeb, Emirhan Tekoglu, Tunc Morova, Nathan A Lack, Eldon Emberly

Phys Rev E· February 2025

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Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.
Jeroen Kneppers, Tesa M Severson, Joseph C Siefert, Pieter Schol, Stacey E P Joosten, Eldon Emberly

Nat Commun· November 2022

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Optimizing Efficiency and Motility of a Polyvalent Molecular Motor.
Mark Rempel, Eldon Emberly

Micromachines (Basel)· June 2022

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Functional mapping of androgen receptor enhancer activity.
Chia-Chi Flora Huang, Shreyas Lingadahalli, Tunc Morova, Dogancan Ozturan, Eugene Hu, Eldon Emberly

Genome Biol· May 2021

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Substrate stiffness tunes the dynamics of polyvalent rolling motors.
Chapin S Korosec, Lavisha Jindal, Mathew Schneider, Ignacio Calderon de la Barca, Martin J Zuckermann, Eldon Emberly

Soft Matter· February 2021

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Abrupt, Asynchronous Changes in Action Representations by Anterior Cingulate Cortex Neurons during Trial and Error Learning.
Eldon Emberly, Jeremy K Seamans

Cereb Cortex· June 2020

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DNA segregation under Par protein control.
Lavisha Jindal, Eldon Emberly

PLoS One· February 2020

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Children's biobehavioral reactivity to challenge predicts DNA methylation in adolescence and emerging adulthood.
Sarah J Goodman, Danielle S Roubinov, Nicole R Bush, Mina Park, Pau Farré, Eldon Emberly

Dev Sci· March 2019

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Dense neural networks for predicting chromatin conformation.
Pau Farré, Alexandre Heurteau, Olivier Cuvier, Eldon Emberly

BMC Bioinformatics· October 2018

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A maximum-entropy model for predicting chromatin contacts.
Pau Farré, Eldon Emberly

PLoS Comput Biol· February 2018

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Operational Principles for the Dynamics of the In Vitro ParA-ParB System.
Lavisha Jindal, Eldon Emberly

PLoS Comput Biol· December 2015

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Concordant and discordant DNA methylation signatures of aging in human blood and brain.
Pau Farré, Meaghan J Jones, Michael J Meaney, Eldon Emberly, Gustavo Turecki

Epigenetics Chromatin· May 2015

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Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data.
Saeed Saberi, Pau Farré, Olivier Cuvier, Eldon Emberly

BMC Bioinformatics· May 2015

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Bacterial motion in narrow capillaries.
Liyan Ping, Vaibhav Wasnik, Eldon Emberly

FEMS Microbiol Ecol· February 2015

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Confinement-dependent localization of diffusing aggregates in cellular geometries.
Mahdi Rezaei Keramati, Vaihbav Wasnik, Liyan Ping, Dibyendu Das, Eldon Emberly

Phys Rev E Stat Nonlin Soft Matter Phys· January 2015

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Localization of aggregating proteins in bacteria depends on the rate of addition.
Karlton Scheu, Rakinder Gill, Saeed Saberi, Pablo Meyer, Eldon Emberly

Front Microbiol· August 2014

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Insulators recruit histone methyltransferase dMes4 to regulate chromatin of flanking genes.
Priscillia Lhoumaud, Magali Hennion, Adrien Gamot, Suresh Cuddapah, Sophie Queille, Eldon Emberly

EMBO J· July 2014

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A model for cell population size control using asymmetric division.
Mani Hamidi, Eldon Emberly

PLoS One· June 2014

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Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing.
Jun Liang, Laurent Lacroix, Adrien Gamot, Suresh Cuddapah, Sophie Queille, Eldon Emberly

Mol Cell· February 2014

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Distinct DNA methylation patterns of cognitive impairment and trisomy 21 in Down syndrome.
Meaghan J Jones, Pau Farré, Lisa M McEwen, Julia L Macisaac, Kim Watt, Eldon Emberly

BMC Med Genomics· December 2013

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Non-equilibrium polar localization of proteins in bacterial cells.
Saeed Saberi, Eldon Emberly

PLoS One· November 2013

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Dissecting genealogy and cell cycle as sources of cell-to-cell variability in MAPK signaling using high-throughput lineage tracking.
Marketa Ricicova, Mani Hamidi, Adam Quiring, Antti Niemistö, Eldon Emberly

Proc Natl Acad Sci U S A· July 2013

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Abrupt changes in the patterns and complexity of anterior cingulate cortex activity when food is introduced into an environment.
Barak F Caracheo, Eldon Emberly, Shirin Hadizadeh, James M Hyman, Jeremy K Seamans

Front Neurosci· June 2013

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Reply to Suderman et al.: Importance of accounting for blood cell composition in epigenetic studies.
Lucia L Lam, Eldon Emberly, Hunter B Fraser, Sarah M Neumann, Edith Chen

Proc Natl Acad Sci U S A· April 2013

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