Publications by authors named "Emilia Lim"

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Gene expression signatures of shortened-telomere-associated fibrotic interstitial lung disease.
Julia R Naso, Carlos Sosa, Lauren E Schefter, Matthew J Petersen, Taysia Nikaido-Landry, Emilia Lim

Hum Pathol· December 2025

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Rethinking the Microenvironment's Role in Chemical-Induced Malignancy.
William H Bisson, Richard A Currie, Emilia L Lim, Coraline Mlynarczyk, Erik J Tokar

Toxicol Sci· December 2025

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Woodsmoke and diesel exhaust: Distinct transcriptomic profiles in the human airway epithelium.
Ryan D Huff, Christopher F Rider, Theodora Lo, Kristen I Hardy, Nataly El-Bittar, Emilia L Lim

Ecotoxicol Environ Saf· September 2025

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DNA methylation cooperates with genomic alterations during non-small cell lung cancer evolution.
Francisco Gimeno-Valiente, Carla Castignani, Elizabeth Larose Cadieux, Nana E Mensah, Xiaohong Liu, Emilia L Lim

Nat Genet· September 2025

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Uncovering fungal pathogens and skin microbiota in rural Malaysia.
William S Owens, Emilia D Lim, Y Erin Chen

Cell Host Microbe· August 2025

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The Nature and Nurture of Carcinogenesis.
Emilia L Lim, James DeGregori

Cancer Discov· June 2025

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Characterizing the evolutionary dynamics of cancer proliferation in single-cell clones with SPRINTER.
Olivia Lucas, Sophia Ward, Rija Zaidi, Abigail Bunkum, Alexander M Frankell, Emilia L Lim

Nat Genet· January 2025

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Author Correction: The evolution of lung cancer and impact of subclonal selection in TRACERx.
Alexander M Frankell, Michelle Dietzen, Maise Al Bakir, Emilia L Lim, Takahiro Karasaki, Eric Lim

Nature· July 2024

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Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity.
Thomas B K Watkins, Emma C Colliver, Matthew R Huska, Tom L Kaufmann, Emilia L Lim

PLoS Comput Biol· October 2023

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Evolutionary characterization of lung adenocarcinoma morphology in TRACERx.
Takahiro Karasaki, David A Moore, Selvaraju Veeriah, Cristina Naceur-Lombardelli, Antonia Toncheva, Emilia L Lim

Nat Med· April 2023

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Genomic-transcriptomic evolution in lung cancer and metastasis.
Carlos Martínez-Ruiz, James R M Black, Clare Puttick, Mark S Hill, Jonas Demeulemeester, Emilia L Lim

Nature· April 2023

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Antibodies against endogenous retroviruses promote lung cancer immunotherapy.
Kevin W Ng, Jesse Boumelha, Katey S S Enfield, Jorge Almagro, Hongui Cha, Emilia L Lim

Nature· April 2023

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The evolution of non-small cell lung cancer metastases in TRACERx.
Maise Al Bakir, Ariana Huebner, Carlos Martínez-Ruiz, Kristiana Grigoriadis, Thomas B K Watkins, Emilia L Lim

Nature· April 2023

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The evolution of lung cancer and impact of subclonal selection in TRACERx.
Alexander M Frankell, Michelle Dietzen, Maise Al Bakir, Emilia L Lim, Takahiro Karasaki, Eric Lim

Nature· April 2023

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Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA.
Christopher Abbosh, Alexander M Frankell, Thomas Harrison, Judit Kisistok, Aaron Garnett, Emilia L Lim

Nature· April 2023

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Impact of risk factors on early cancer evolution.
Clare E Weeden, William Hill, Emilia L Lim, Eva Grönroos, Charles Swanton

Cell· April 2023

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Induction of APOBEC3 Exacerbates DNA Replication Stress and Chromosomal Instability in Early Breast and Lung Cancer Evolution.
Subramanian Venkatesan, Mihaela Angelova, Clare Puttick, Haoran Zhai, Deborah R Caswell, Emilia L Lim

Cancer Discov· October 2021

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Using DNA sequencing data to quantify T cell fraction and therapy response.
Robert Bentham, Kevin Litchfield, Thomas B K Watkins, Emilia L Lim, Rachel Rosenthal

Nature· September 2021

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Meta-analysis of tumor- and T cell-intrinsic mechanisms of sensitization to checkpoint inhibition.
Kevin Litchfield, James L Reading, Clare Puttick, Krupa Thakkar, Chris Abbosh, Emilia Lim

Cell· February 2021

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Pervasive chromosomal instability and karyotype order in tumour evolution.
Thomas B K Watkins, Emilia L Lim, Marina Petkovic, Sergi Elizalde, Nicolai J Birkbak

Nature· November 2020

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Publisher Correction: The National Lung Matrix Trial of personalized therapy in lung cancer.
Gary Middleton, Peter Fletcher, Sanjay Popat, Joshua Savage, Yvonne Summers, Emilia Lim

Nature· September 2020

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Publisher Correction: A clonal expression biomarker associates with lung cancer mortality.
Dhruva Biswas, Nicolai J Birkbak, Rachel Rosenthal, Crispin T Hiley, Emilia L Lim

Nat Med· July 2020

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The National Lung Matrix Trial of personalized therapy in lung cancer.
Gary Middleton, Peter Fletcher, Sanjay Popat, Joshua Savage, Yvonne Summers, Emilia Lim

Nature· July 2020

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Escape from nonsense-mediated decay associates with anti-tumor immunogenicity.
Kevin Litchfield, James L Reading, Emilia L Lim, Hang Xu, Po Liu

Nat Commun· July 2020

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