Publications by authors named "Frederick Matsen"

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Which shoulder functions correlate with patient satisfaction after primary shoulder arthroplasty?
Andrew P Collins, John Gregory, Anastasia J Whitson, Frederick A Matsen, Jason E Hsu

J Shoulder Elbow Surg· January 2026

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Modeling surgeon belief updating under bias: a Bayesian simulation in shoulder arthroplasty.
Mariano E Menendez, Michael A Moverman, Surena Namdari, Frederick A Matsen, David Ring

JSES Int· January 2026

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The Structure of Deviations From Maximum Parsimony for Densely-Sampled Data and Applications for Clade Support Estimation.
William Howard-Snyder, Will Dumm, Mary Barker, Ognian Milanov, Claris Winston, Frederick A Matsen

IEEE Trans Comput Biol Bioinform· December 2025

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Factors associated with higher inpatient hospitalization costs and improvements in shoulder-specific patient-reported outcomes following revision shoulder arthroplasty.
Andrew P Collins, Sagar S Chawla, Anastasia J Whitson, Frederick A Matsen, Jason E Hsu

Shoulder Elbow· December 2025

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Learning from Surgical Failures.
Mariano E Menendez, Frederick A Matsen

J Bone Joint Surg Am· December 2025

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Tree rearrangement graphs admit paths of decreasing Robinson-Foulds distance.
Lena Collienne, Frederick A Matsen

ArXiv· December 2025

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Genetic and environmental imprints on T cell receptor repertoires as predictors of graft-versus-host disease.
Assya Trofimov, Zachary Montague, Magdalena L Russell, Rachel Bender Ignacio, Terry Stevens-Ayers, Frederick Matsen

bioRxiv· December 2025

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Assessing glenoid orientation on the axillary view: a novel technique using the posterolateral acromion-to-coracoid line.
Michael Hachadorian, Mihir Sheth, Ermyas Kahsai, Anastasia Whitson, Corey Schiffman, Frederick Matsen

Int Orthop· November 2025

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Objective Ignorance: A Flaw in Our Ability to Predict Patient Outcomes.
Frederick A Matsen

J Bone Joint Surg Am· November 2025

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Characterizing glenoid wear after hemiarthroplasty with concentric glenoid reaming: a study of 113 arthroplasties at a mean of 6.7 years of follow-up.
Andrew P Collins, Mihir M Sheth, James F Stenson, Ermyas A Kahsai, Kevin J Khoo, Frederick A Matsen

J Shoulder Elbow Surg· October 2025

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Separating selection from mutation in antibody language models.
Frederick A Matsen, Will Dumm, Kevin Sung, Mackenzie M Johnson, David Rich

bioRxiv· October 2025

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larch: mapping the parsimony-optimal landscape of trees for directed exploration.
Mary Barker, Ognian Milanov, Will Dumm, Dave Rich, Yatish Turakhia, Frederick A Matsen

bioRxiv· October 2025

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Does Cutibacterium skin load impact the outcomes of primary shoulder arthroplasty?
Andrew P Collins, Grace Gregory, Zachary D Mills, Anastasia J Whitson, Frederick A Matsen

J Shoulder Elbow Surg· September 2025

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Does postoperative glenoid component retroversion following anatomic total shoulder arthroplasty affect clinical outcomes? A systematic review and meta-analysis.
Jake X Checketts, Bryce Sanchez, Grayson Norris, Tyler K Williamson, Michael E Hachadorian, Frederick A Matsen

J Shoulder Elbow Surg· September 2025

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Inference of germinal center evolutionary dynamics via simulation-based deep learning.
Duncan K Ralph, Athanasios G Bakis, Jared Galloway, Ashni A Vora, Tatsuya Araki, Frederick A Matsen

ArXiv· August 2025

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Thrifty wide-context models of B cell receptor somatic hypermutation.
Kevin Sung, Mackenzie M Johnson, Will Dumm, Noah Simon, Hugh Haddox, Frederick A Matsen

Elife· August 2025

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A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer-Encoder.
Frederick A Matsen, Kevin Sung, Mackenzie M Johnson, Will Dumm, David Rich

Mol Biol Evol· July 2025

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Replaying germinal center evolution on a quantified affinity landscape.
William S DeWitt, Ashni A Vora, Tatsuya Araki, Jared G Galloway, Tanwee Alkutkar, Frederick A Matsen

bioRxiv· June 2025

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Biological causes and impacts of rugged tree landscapes in phylodynamic inference.
Jiansi Gao, Marius Brusselmans, Luiz M Carvalho, Marc A Suchard, Guy Baele, Frederick A Matsen

bioRxiv· June 2025

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Transient silencing of hypermutation preserves B cell affinity during clonal bursting.
Juhee Pae, Niklas Schwan, Bertrand Ottino-Loffler, William S DeWitt, Amar Garg, Frederick A Matsen

Nature· May 2025

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Increased immunogen valency improves the maturation of vaccine-elicited HIV-1 VRC01-like antibodies.
Parul Agrawal, Arineh Khechaduri, Kelsey R Salladay, Anna MacCamy, Duncan K Ralph, Frederick A Matsen

PLoS Pathog· May 2025

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Increased immunogen valency improves the maturation of vaccine-elicited HIV-1 VRC01-class antibodies.
Parul Agrawal, Arineh Khechaduri, Kelsey R Salladay, Anna MacCamy, Duncan K Ralph, Frederick A Matsen

bioRxiv· March 2025

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PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders.
Tianyu Xie, Harry Richman, Jiansi Gao, Frederick A Matsen, Cheng Zhang

ArXiv· February 2025

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Finding high posterior density phylogenies by systematically extending a directed acyclic graph.
Chris Jennings-Shaffer, David H Rich, Matthew Macaulay, Michael D Karcher, Tanvi Ganapathy, Frederick A Matsen

Algorithms Mol Biol· February 2025

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The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure.
Hugh K Haddox, Georg Angehrn, Luca Sesta, Chris Jennings-Shaffer, Seth D Temple, Frederick A Matsen

bioRxiv· January 2025

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