Publications by authors named "Ivan Barilar"

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SARS-CoV-2 Evolution in an HIV-Endemic Setting: A Genomic Epidemiology Study from Botswana.
Xuhua Geng, Ivan Barilar, Monamodi Kesamang, Kefentse Arnold Tumedi, Maitshwarelo Matsheka

medRxiv· November 2025

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Genomic insights into the plasmidome of non-tuberculous mycobacteria.
Margo Diricks, Florian P Maurer, Viola Dreyer, Ivan Barilar, Christian Utpatel

Genome Med· March 2025

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Using genomic epidemiology and geographic activity spaces to investigate tuberculosis outbreaks in Botswana.
Chelsea R Baker, Ivan Barilar, Leonardo S de Araujo, Daniel M Parker, Kimberly Fornace

medRxiv· December 2024

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Phylodynamic analysis reveals disparate transmission dynamics of -complex lineages in Botswana.
Qiao Wang, Ivan Barilar, Volodymyr M Minin, Chawangwa Modongo, Patrick K Moonan

medRxiv· November 2024

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Use of Whole Genome Sequencing for Mycobacterium tuberculosis Complex Antimicrobial Susceptibility Testing.
Vanessa Mohr, Lindsay Sonnenkalb, Christian Utpatel, Ivan Barilar, Margo Diricks

Methods Mol Biol· July 2024

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Use of Whole Genome Sequencing for Mycobacterium tuberculosis Complex Antimicrobial Susceptibility Testing: From Sequence Data to Resistance Profiles.
Viola Dreyer, Lindsay Sonnenkalb, Margo Diricks, Christian Utpatel, Ivan Barilar

Methods Mol Biol· July 2024

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Challenging the gold standard: the limitations of molecular assays for detection of heteroresistance.
Sarah N Danchuk, Ori E Solomon, Thomas Andreas Kohl, Viola Dreyer, Ivan Barilar

Thorax· June 2024

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Emergence of bedaquiline-resistant tuberculosis and of multidrug-resistant and extensively drug-resistant Mycobacterium tuberculosis strains with rpoB Ile491Phe mutation not detected by Xpert MTB/RIF in Mozambique: a retrospective observational study.
Ivan Barilar, Tatiana Fernando, Christian Utpatel, Cláudio Abujate, Carla Maria Madeira

Lancet Infect Dis· March 2024

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Molecular determinants of multidrug-resistant tuberculosis in Sierra Leone.
Harriet N A Blankson, Rashidatu Fouad Kamara, Ivan Barilar, Sönke Andres, Ousman S Conteh

Microbiol Spectr· March 2024

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Tuberculosis Variant with Rifampin Resistance Undetectable by Xpert MTB/RIF, Botswana.
Chawangwa Modongo, Ivan Barilar, Qiao Wang, Tuduetso Molefi, Topo Makhondo

Emerg Infect Dis· November 2023

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activity of new combinations of β-lactam and β-lactamase inhibitors against the complex.
Elin Economou Lundeberg, Viktoria Andersson, Maria Wijkander, Ramona Groenheit, Mikael Mansjö, Ivan Barilar

Microbiol Spectr· September 2023

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Transmission Dynamics of a Mycobacterium tuberculosis Complex Outbreak in an Indigenous Population in the Colombian Amazon Region.
Francy J Pérez-Llanos, Viola Dreyer, Ivan Barilar, Christian Utpatel, Thomas A Kohl

Microbiol Spectr· June 2023

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Use of High-Resolution Geospatial and Genomic Data to Characterize Recent Tuberculosis Transmission, Botswana.
Chelsea R Baker, Ivan Barilar, Leonardo S de Araujo, Anne W Rimoin, Daniel M Parker

Emerg Infect Dis· May 2023

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Limited Nosocomial Transmission of Drug-Resistant Tuberculosis, Moldova.
Ecaterina Noroc, Dumitru Chesov, Matthias Merker, Matthias I Gröschel, Ivan Barilar

Emerg Infect Dis· May 2023

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HIGH-RESOLUTION CHARACTERIZATION OF NOSOCOMIAL MYCOBACTERIUM TUBERCULOSIS TRANSMISSION EVENTS IN BOTSWANA.
Jonathan P Smith, Chawangwa Modongo, John E Oeltmann, Mbatshi Dima, Ogopotse Matsiri, Ivan Barilar

Am J Epidemiol· February 2023

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Using genetic data to identify transmission risk factors: Statistical assessment and application to tuberculosis transmission.
Isaac H Goldstein, Damon Bayer, Ivan Barilar, Balladiah Kizito, Ogopotse Matsiri

PLoS Comput Biol· December 2022

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Investigating resistance in clinical Mycobacterium tuberculosis complex isolates with genomic and phenotypic antimicrobial susceptibility testing: a multicentre observational study.
Iris Finci, Audrey Albertini, Matthias Merker, Sönke Andres, Nino Bablishvili, Ivan Barilar

Lancet Microbe· September 2022

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High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region.
Viola Dreyer, Ayan Mandal, Prachi Dev, Matthias Merker, Ivan Barilar

Genome Med· August 2022

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Origin and Global Expansion of Complex Lineage 3.
Yassir A Shuaib, Christian Utpatel, Thomas A Kohl, Ivan Barilar, Margo Diricks

Genes (Basel)· May 2022

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Whole genome sequencing-based drug resistance predictions of multidrug-resistant isolates from Tanzania.
Peter M Mbelele, Christian Utpatel, Elingarami Sauli, Emmanuel A Mpolya, Beatrice K Mutayoba, Ivan Barilar

JAC Antimicrob Resist· April 2022

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Emergence of bedaquiline resistance in a high tuberculosis burden country.
Elena Chesov, Dumitru Chesov, Florian P Maurer, Sönke Andres, Christian Utpatel, Ivan Barilar

Eur Respir J· March 2022

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Design of Multidrug-Resistant Tuberculosis Treatment Regimens Based on DNA Sequencing.
Hans-Peter Grobbel, Matthias Merker, Niklas Köhler, Sönke Andres, Harald Hoffmann, Ivan Barilar

Clin Infect Dis· October 2021

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Role of Epistasis in Amikacin, Kanamycin, Bedaquiline, and Clofazimine Resistance in Mycobacterium tuberculosis Complex.
Roger Vargas, Luca Freschi, Andrea Spitaleri, Sabira Tahseen, Ivan Barilar

Antimicrob Agents Chemother· October 2021

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MDR M. tuberculosis outbreak clone in Eswatini missed by Xpert has elevated bedaquiline resistance dated to the pre-treatment era.
Patrick Beckert, Elisabeth Sanchez-Padilla, Matthias Merker, Viola Dreyer, Thomas A Kohl, Ivan Barilar

Genome Med· November 2020

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Detection of low-frequency resistance-mediating SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains with binoSNP.
Viola Dreyer, Christian Utpatel, Thomas A Kohl, Ivan Barilar, Matthias I Gröschel

Sci Rep· May 2020

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