Publications by authors named "JM Thornton"

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Measuring catalytic mechanism similarity - a new approach to study enzyme function and evolution.
Antonio J M Ribeiro, Ioannis G Riziotis, Neera Borkakoti, Pedro A Fernandes, Maria J Ramos, Janet M Thornton

FEBS J· August 2025

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A structural perspective on enzymes and their catalytic mechanisms.
Neera Borkakoti, António J M Ribeiro, Janet M Thornton

Curr Opin Struct Biol· June 2025

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Paradigms of convergent evolution in enzymes.
Ioannis G Riziotis, Jenny C Kafas, Gabriel Ong, Neera Borkakoti, António J M Ribeiro, Janet M Thornton

FEBS J· February 2025

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Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes.
O Vavra, J Tyzack, F Haddadi, J Stourac, J Damborsky, J M Thornton

J Cheminform· October 2024

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Measuring the Interprofessional Health of the Pediatric Cardiovascular Operating Room Work Environment.
Jason M Thornton, Jean A Connor, Patricia A Dwyer, Courtney L Porter, Lauren P Hartwell

Pediatr Qual Saf· June 2024

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Multigenerational diabetes mellitus.
Jennifer M Thornton, Nishel M Shah, Karen A Lillycrop, Wei Cui, Mark R Johnson

Front Endocrinol (Lausanne)· February 2024

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Enzyme function and evolution through the lens of bioinformatics.
Antonio J M Ribeiro, Ioannis G Riziotis, Neera Borkakoti, Janet M Thornton

Biochem J· November 2023

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The 3D Modules of Enzyme Catalysis: Deconstructing Active Sites into Distinct Functional Entities.
Ioannis G Riziotis, António J M Ribeiro, Neera Borkakoti, Janet M Thornton

J Mol Biol· October 2023

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EzMechanism: an automated tool to propose catalytic mechanisms of enzyme reactions.
Antonio J M Ribeiro, Ioannis G Riziotis, Jonathan D Tyzack, Neera Borkakoti, Janet M Thornton

Nat Methods· October 2023

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Computational analysis of drug resistance of taxanes bound to human β-tubulin mutant (D26E).
Abdullahi Ibrahim Uba, Candice Bui-Linh, Julianne M Thornton, Michael Olivieri, Chun Wu

J Mol Graph Model· September 2023

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Lipoxin A promotes antibiotic and monocyte bacterial killing in established Pseudomonas aeruginosa biofilm formed under hydrodynamic conditions.
Julianne M Thornton, Cristina M Padovani, Ana Rodriguez, Bernd W Spur, Kingsley Yin

FASEB J· August 2023

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The mission to ensure continued funding for excellent basic research.
Angus I Lamond, Ivan Dikic, Andre Nussenzweig, Christoph W Müller, Janet M Thornton

EMBO Rep· July 2023

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Author Correction: Temporal changes in the gene expression heterogeneity during brain development and aging.
Ulaş Işıldak, Mehmet Somel, Janet M Thornton, Handan Melike Dönertaş

Sci Rep· June 2023

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SelectBCM tool: a batch evaluation framework to select the most appropriate batch-correction methods for bulk transcriptome analysis.
Madhulika Mishra, Lucas Barck, Pablo Moreno, Guillaume Heger, Yuyao Song, Janet M Thornton

NAR Genom Bioinform· March 2023

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AlphaFold2 protein structure prediction: Implications for drug discovery.
Neera Borkakoti, Janet M Thornton

Curr Opin Struct Biol· February 2023

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Mapping the Constrained Coding Regions in the Human Genome to Their Corresponding Proteins.
Marcia A Hasenahuer, Alba Sanchis-Juan, Roman A Laskowski, James A Baker, James D Stephenson, Janet M Thornton

J Mol Biol· January 2023

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Using mechanism similarity to understand enzyme evolution.
António J M Ribeiro, Ioannis G Riziotis, Jonathan D Tyzack, Neera Borkakoti, Janet M Thornton

Biophys Rev· December 2022

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A structural biology community assessment of AlphaFold2 applications.
Mehmet Akdel, Douglas E V Pires, Eduard Porta Pardo, Jürgen Jänes, Arthur O Zalevsky, Janet M Thornton

Nat Struct Mol Biol· November 2022

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GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs.
Charles A Santana, Sandro C Izidoro, Raquel C de Melo-Minardi, Jonathan D Tyzack, António J M Ribeiro, Janet M Thornton

Nucleic Acids Res· July 2022

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Capturing the geometry, function, and evolution of enzymes with 3D templates.
Ioannis G Riziotis, Janet M Thornton

Protein Sci· July 2022

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Human populations in the world's mountains: Spatio-temporal patterns and potential controls.
James M Thornton, Mark A Snethlage, Roger Sayre, Davnah R Urbach, Daniel Viviroli

PLoS One· July 2022

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Resolvin D2 promotes host defense in a 2 - hit model of sepsis with secondary lung infection.
J M Walker, P Y Kadiyam Sundarasivarao, J M Thornton, K Sochacki, A Rodriguez

Prostaglandins Other Lipid Mediat· April 2022

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Conformational Variation in Enzyme Catalysis: A Structural Study on Catalytic Residues.
Ioannis G Riziotis, António J M Ribeiro, Neera Borkakoti, Janet M Thornton

J Mol Biol· April 2022

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The impact of AlphaFold2 one year on.
David T Jones, Janet M Thornton

Nat Methods· January 2022

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Role of Specialized Pro-Resolving Mediators in Modifying Host Defense and Decreasing Bacterial Virulence.
Julianne M Thornton, Kingsley Yin

Molecules· November 2021

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