Publications by authors named "Jason Fernandes"

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Clinical outcomes of neuroendocrine carcinoma of the cervix: Retrospective review from a large academic cancer centre.
Jason Fernandes, Anjelica Hodgson, Kathy Han, Michael Milosevic, Jelena Lukovic

Gynecol Oncol Rep· October 2025

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Correction: Functional and structural segregation of overlapping helices in HIV-1.
Maliheh Safari, Bhargavi Jayaraman, Henni Zommer, Shumin Yang, Cynthia Smith, Jason D Fernandes

Elife· January 2025

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Caspase cleavage of gasdermin E causes neuronal pyroptosis in HIV-associated neurocognitive disorder.
Jason P Fernandes, William G Branton, Eric A Cohen, Gerrit Koopman, Ivanela Kondova

Brain· February 2024

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Gasdermin D activation in oligodendrocytes and microglia drives inflammatory demyelination in progressive multiple sclerosis.
Niall M Pollock, Jason P Fernandes, Jenilee Woodfield, Eman Moussa, Brittyne Hlavay

Brain Behav Immun· January 2024

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Microbial molecule ingress promotes neuroinflammation and brain CCR5 expression in persons with HIV-associated neurocognitive disorders.
William G Branton, Jason P Fernandes, Nazanin Mohammadzadeh, Mathew A L Doan, Jon D Laman

Brain Behav Immun· January 2023

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Mutant KRAS regulates transposable element RNA and innate immunity via KRAB zinc-finger genes.
Roman E Reggiardo, Sreelakshmi Velandi Maroli, Haley Halasz, Mehmet Ozen, Eva Hrabeta-Robinson, Jason Fernandes

Cell Rep· July 2022

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Functional and structural segregation of overlapping helices in HIV-1.
Maliheh Safari, Bhargavi Jayaraman, Henni Zommer, Shumin Yang, Cynthia Smith, Jason D Fernandes

Elife· May 2022

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A high-quality bonobo genome refines the analysis of hominid evolution.
Yafei Mao, Claudia R Catacchio, LaDeana W Hillier, David Porubsky, Ruiyang Li, Jason D Fernandes

Nature· June 2021

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Intranasal anti-caspase-1 therapy preserves myelin and glucose metabolism in a model of progressive multiple sclerosis.
Leina B Saito, Jason P Fernandes, Mackenzie J Smith, Matthew A L Doan, William G Branton

Glia· January 2021

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The UCSC Genome Browser database: 2021 update.
Jairo Navarro Gonzalez, Ann S Zweig, Matthew L Speir, Daniel Schmelter, Kate R Rosenbloom, Jason D Fernandes

Nucleic Acids Res· January 2021

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Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.
Wesley C Warren, R Alan Harris, Marina Haukness, Ian T Fiddes, Shwetha C Murali, Jason Fernandes

Science· December 2020

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Stability of SARS-CoV-2 phylogenies.
Yatish Turakhia, Nicola De Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Jason D Fernandes

PLoS Genet· November 2020

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The UCSC SARS-CoV-2 Genome Browser.
Jason D Fernandes, Angie S Hinrichs, Hiram Clawson, Jairo Navarro Gonzalez, Brian T Lee

Nat Genet· October 2020

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Co-option of the lineage-specific retrotransposon in the gibbon genome.
Mariam Okhovat, Kimberly A Nevonen, Brett A Davis, Pryce Michener, Samantha Ward, Jason D Fernandes

Proc Natl Acad Sci U S A· August 2020

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Activation of the executioner caspases-3 and -7 promotes microglial pyroptosis in models of multiple sclerosis.
Brienne A McKenzie, Jason P Fernandes, Matthew A L Doan, Laura M Schmitt, William G Branton

J Neuroinflammation· August 2020

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A survey-based analysis of the academic job market.
Jason D Fernandes, Sarvenaz Sarabipour, Christopher T Smith, Natalie M Niemi, Nafisa M Jadavji

Elife· June 2020

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The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families.
Jason D Fernandes, Armando Zamudio-Hurtado, Hiram Clawson, W James Kent, David Haussler

Mob DNA· March 2020

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Breast Tumor-Associated Metalloproteases Restrict Reovirus Oncolysis by Cleaving the σ1 Cell Attachment Protein and Can Be Overcome by Mutation of σ1.
Jason P Fernandes, Francisca Cristi, Heather E Eaton, Patricia Chen, Sarah Haeflinger

J Virol· November 2019

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Monitoring Breast Cancer Response to Neoadjuvant Chemotherapy Using Ultrasound Strain Elastography.
Jason Fernandes, Lakshmanan Sannachi, William T Tran, Alexander Koven, Elyse Watkins

Transl Oncol· September 2019

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Highly Mutable Linker Regions Regulate HIV-1 Rev Function and Stability.
Bhargavi Jayaraman, Jason D Fernandes, Shumin Yang, Cynthia Smith, Alan D Frankel

Sci Rep· March 2019

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IL-23 signaling in Th17 cells is inhibited by HIV infection and is not restored by HAART: Implications for persistent immune activation.
Jason R Fernandes, Tamara K Berthoud, Ashok Kumar, Jonathan B Angel

PLoS One· November 2017

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HIV and HIV-Tat inhibit LPS-induced IL-27 production in human macrophages by distinct intracellular signaling pathways.
Niranjala Gajanayaka, Shifawn O'Hara, Yulia Konarski, Jason Fernandes, Kar Muthumani

J Leukoc Biol· September 2017

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Functional Segregation of Overlapping Genes in HIV.
Jason D Fernandes, Tyler B Faust, Nicolas B Strauli, Cynthia Smith, David C Crosby

Cell· December 2016

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Oligomeric viral proteins: small in size, large in presence.
Bhargavi Jayaraman, Amber M Smith, Jason D Fernandes, Alan D Frankel

Crit Rev Biochem Mol Biol· September 2016

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Thromboelastography: Clinical Application, Interpretation, and Transfusion Management.
Jason C Fernandes

AANA J· August 2016

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