Publications by authors named "Jeff Ranish"

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QuickProt: A bioinformatics and visualization tool for DIA and PRM mass spectrometry-based proteomics datasets.
Omar Arias-Gaguancela, Carmen Palii, Mehar Un Nissa, Marjorie Brand, Jeff Ranish

bioRxiv· March 2025

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Isobaric crosslinking mass spectrometry technology for studying conformational and structural changes in proteins and complexes.
Jie Luo, Jeff Ranish

Elife· November 2024

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Structural insights into the human NuA4/TIP60 acetyltransferase and chromatin remodeling complex.
Zhenlin Yang, Amel Mameri, Claudia Cattoglio, Catherine Lachance, Alfredo Jose Florez Ariza, Jeff A Ranish

Science· August 2024

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The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming.
Dhurjhoti Saha, Solomon Hailu, Arjan Hada, Junwoo Lee, Jie Luo, Jeff A Ranish

Nat Commun· August 2023

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PARK7/DJ-1 promotes pyruvate dehydrogenase activity and maintains T homeostasis during ageing.
Egle Danileviciute, Ni Zeng, Christophe M Capelle, Nicole Paczia, Mark A Gillespie, Jeff Ranish

Nat Metab· May 2022

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TAF8 regions important for TFIID lobe B assembly or for TAF2 interactions are required for embryonic stem cell survival.
Elisabeth Scheer, Jie Luo, Andrea Bernardini, Frank Ruffenach, Jean-Marie Garnier, Jeff Ranish

J Biol Chem· November 2021

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Assembly of SNAPc, Bdp1, and TBP on the U6 snRNA Gene Promoter in Drosophila melanogaster.
Mun Kyoung Kim, An Tranvo, Ann Marie Hurlburt, Neha Verma, Phuc Phan, Jeff Ranish

Mol Cell Biol· May 2020

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Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement.
Avinash B Patel, Camille M Moore, Basil J Greber, Jie Luo, Stefan A Zukin, Jeff Ranish

Elife· December 2019

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Identification of Cross-linked Peptides Using Isotopomeric Cross-linkers.
Jie Luo, Jacob Bassett, Jeff Ranish

J Am Soc Mass Spectrom· September 2019

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Histone Octamer Structure Is Altered Early in ISW2 ATP-Dependent Nucleosome Remodeling.
Arjan Hada, Swetansu K Hota, Jie Luo, Yuan-Chi Lin, Seyit Kale, Jeff Ranish

Cell Rep· July 2019

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Structure of human TFIID and mechanism of TBP loading onto promoter DNA.
Avinash B Patel, Robert K Louder, Basil J Greber, Sebastian Grünberg, Jie Luo, Jeff Ranish

Science· December 2018

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Molecular structure of promoter-bound yeast TFIID.
Olga Kolesnikova, Adam Ben-Shem, Jie Luo, Jeff Ranish, Patrick Schultz

Nat Commun· November 2018

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Transcription Activation Domains of the Yeast Factors Met4 and Ino2: Tandem Activation Domains with Properties Similar to the Yeast Gcn4 Activator.
Derek Pacheco, Linda Warfield, Michelle Brajcich, Hannah Robbins, Jie Luo, Jeff Ranish

Mol Cell Biol· May 2018

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Gcn4-Mediator Specificity Is Mediated by a Large and Dynamic Fuzzy Protein-Protein Complex.
Lisa M Tuttle, Derek Pacheco, Linda Warfield, Jie Luo, Jeff Ranish

Cell Rep· March 2018

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Loss of Snf5 Induces Formation of an Aberrant SWI/SNF Complex.
Payel Sen, Jie Luo, Arjan Hada, Solomon G Hailu, Mekonnen Lemma Dechassa, Jeff Ranish

Cell Rep· February 2017

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The Architecture of Trypanosoma brucei editosomes.
Suzanne M McDermott, Jie Luo, Jason Carnes, Jeff A Ranish, Kenneth Stuart

Proc Natl Acad Sci U S A· October 2016

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Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.
Jie Luo, Peter Cimermancic, Shruthi Viswanath, Christopher C Ebmeier, Bong Kim, Jeff Ranish

Mol Cell· September 2015

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Regulation of Mec1 kinase activity by the SWI/SNF chromatin remodeling complex.
Prabodh Kapoor, Yunhe Bao, Jing Xiao, Jie Luo, Jianfeng Shen, Jeff Ranish

Genes Dev· March 2015

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Regulation of the Rhp26ERCC6/CSB chromatin remodeler by a novel conserved leucine latch motif.
Lanfeng Wang, Oliver Limbo, Jia Fei, Lu Chen, Bong Kim, Jeff A Ranish

Proc Natl Acad Sci U S A· December 2014

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Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy.
Cigall Kadoch, Diana C Hargreaves, Courtney Hodges, Laura Elias, Lena Ho, Jeff Ranish

Nat Genet· June 2013

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Phosphorylation-dependent regulation of cyclin D1 and cyclin A gene transcription by TFIID subunits TAF1 and TAF7.
Susan L Kloet, Jennifer L Whiting, Phil Gafken, Jeff Ranish, Edith H Wang

Mol Cell Biol· August 2012

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An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency.
Lena Ho, Jehnna L Ronan, Jiang Wu, Brett T Staahl, Lei Chen, Jeff Ranish

Proc Natl Acad Sci U S A· March 2009

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A database of mass spectrometric assays for the yeast proteome.
Paola Picotti, Henry Lam, David Campbell, Eric W Deutsch, Hamid Mirzaei, Jeff Ranish

Nat Methods· November 2008

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