Publications by authors named "JieFu Li"

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Astrocyte cell-surface proteomics identified CD44 as an OPN/SPP1 receptor regulating lipid metabolism and glial crosstalk in Alzheimer's disease.
Omar Peña-Ramos, Manasee Gedam, Xue Zhang, Shuo Wang, Chuangye Qi, Hongjie Li, Jiefu Li, Liqun Luo

bioRxiv· December 2025

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Chemical modulation of gut bacterial metabolism induces colanic acid and extends the lifespan of nematode and mammalian hosts.
Guo Hu, Marzia Savini, Matthew Brandon Cooke, Xin Wei, Dinghuan Deng, Alice X Wen, Jiefu Li

PLoS Biol· November 2025

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A foundation language model to decipher diverse regulation of RNAs.
Hanwen Zhou, Yue Hu, Yulong Zheng, Jiefu Li, Jielong Peng

Genome Biol· September 2025

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glial cell-surface proteomics identifies pro-longevity factors in .
Madeline P Marques, Bo Sun, Ye-Jin Park, Tyler Jackson, Tzu-Chiao Lu, Liqun Luo, Jiefu Li, Hongjie Li

bioRxiv· September 2025

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PEELing: an integrated and user-centric platform for spatially resolved proteomics data analysis.
Xi Peng, Jody Clements, Zuzhi Jiang, Shuo Han, Stephan Preibisch, Jiefu Li

Bioinformatics· August 2025

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Endocytome profiling uncovers cell-surface protein dynamics underlying neuronal connectivity.
Colleen N McLaughlin, Hui Ji, Katherine X Dong, Chuanyun Xu, Kenneth Kin Lam Wong, Zhuoran Li, Jiefu Li, Alice Y Ting, Liqun Luo

bioRxiv· August 2025

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Advances in neoantigen-based immunotherapy for head and neck squamous cell carcinoma: a comprehensive review.
Manzhu Jiang, Jiefu Li, Jianhua Wei, Xuerong Yang, Weiqi Wang

Front Oncol· May 2025

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Molecular organization of central cholinergic synapses.
Justin S Rosenthal, Dean Zhang, Jun Yin, Caixia Long, George Yang, Yan Li, Wei-Ping Li, Jiefu Li

Proc Natl Acad Sci U S A· April 2025

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Cell-surface Milieu Remodeling in Human Dendritic Cell Activation.
Namrata D Udeshi, Charles Xu, Zuzhi Jiang, Shihong Max Gao, Qian Yin, Jiefu Li

J Immunol· October 2024

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Molecular and cellular mechanisms of teneurin signaling in synaptic partner matching.
Chuanyun Xu, Zhuoran Li, Cheng Lyu, Yixin Hu, Colleen N McLaughlin, Hongjie Li, Tongchao Li, Yang Li, Alice Y Ting, Jiefu Li, Liqun Luo

Cell· September 2024

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Improving AlphaFold Predicted Contacts for Alpha-Helical Transmembrane Proteins Using Structural Features.
Aman Sawhney, Jiefu Li, Li Liao

Int J Mol Sci· May 2024

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Rapid multiple protein sequence search by parallel and heterogeneous computation.
Jiefu Li, Ziyuan Wang, Xuwei Fan, Ruijie Yao, Guoqing Zhang

Bioinformatics· March 2024

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Improving Inter-Helix Contact Prediction With Local 2D Topological Information.
Jiefu Li, Aman Sawhney, Jung-Youn Lee, Li Liao

IEEE/ACM Trans Comput Biol Bioinform· November 2023

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Improving AlphaFold predicted contacts in alpha-helical transmembrane proteins structures using structural features.
Aman Sawhney, Jiefu Li, Li Liao

Res Sq· October 2023

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Targeting of plasmodesmal proteins requires unconventional signals.
Gabriel Robles Luna, Jiefu Li, Xu Wang, Li Liao, Jung-Youn Lee

Plant Cell· August 2023

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Spheromers reveal robust T cell responses to the Pfizer/BioNTech vaccine and attenuated peripheral CD8 T cell responses post SARS-CoV-2 infection.
Fei Gao, Vamsee Mallajosyula, Prabhu S Arunachalam, Kattria van der Ploeg, Monali Manohar, Oliver Wirz, Richard Willis, Jiefu Li, Chunfeng Li, Bali Pulendran

Immunity· April 2023

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In situ cell-type-specific cell-surface proteomic profiling in mice.
S Andrew Shuster, Jiefu Li, URee Chon, Miley C Sinantha-Hu, David J Luginbuhl, Alice Y Ting, Liqun Luo

Neuron· December 2022

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Transcription factor Acj6 controls dendrite targeting via a combinatorial cell-surface code.
Qijing Xie, Jiefu Li, Hongjie Li, Namrata D Udeshi, Tanya Svinkina, Daniel Orlin, Tongchao Li, Alice Y Ting, Liqun Luo

Neuron· July 2022

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An interactive viral genome evolution network analysis system enabling rapid large-scale molecular tracing of SARS-CoV-2.
Yunchao Ling, Ruifang Cao, Jiaqiang Qian, Jiefu Li, Haokui Zhou, Liyun Yuan, Liangxiao Ma, Yixue Li

Sci Bull (Beijing)· April 2022

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KIRCD8 T cells suppress pathogenic T cells and are active in autoimmune diseases and COVID-19.
Jing Li, Maxim Zaslavsky, Yapeng Su, Jing Guo, Michael J Sikora, Liang Chen, Jiefu Li, Julie Wilhelmy, William H Robinson, Cornelia L Dekker, Ludvig M Sollid, Naresha Saligrama

Science· April 2022

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Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly.
Hongjie Li, Jasper Janssens, Maxime De Waegeneer, Sai Saroja Kolluru, Kristofer Davie, Colleen N McLaughlin, Julian A T Dow, Brian Oliver, Liqun Luo, Benjamin Bolival, Julie A Brill, Felix Horns, Jiefu Li, Joshua Shing Shun Li, Kai Li, Ke Li, Liying Li, Tun Li, Maria Litovchenko, Han-Hsuan Liu, Yifang Liu, Anjeli Mase, Caitlin E McDonough-Goldstein, Caitlin E O'Brien, Angela Oliveira Pisco, Carolina Reisenman, Philip Shiu

Science· March 2022

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Human KIR CD8 T cells target pathogenic T cells in Celiac disease and are active in autoimmune diseases and COVID-19.
Jing Li, Maxim Zaslavsky, Yapeng Su, Michael J Sikora, Vincent van Unen, Liang Chen, Jiefu Li, Julie Wilhelmy, William H Robinson, Ludvig M Sollid, Naresha Saligrama

bioRxiv· December 2021

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A new algorithm to train hidden Markov models for biological sequences with partial labels.
Jiefu Li, Jung-Youn Lee, Li Liao

BMC Bioinformatics· March 2021

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Single-cell transcriptomes of developing and adult olfactory receptor neurons in .
Colleen N McLaughlin, Maria Brbić, Qijing Xie, Tongchao Li, Felix Horns, Jiefu Li, Liqun Luo, Hongjie Li

Elife· February 2021

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Temporal evolution of single-cell transcriptomes of olfactory projection neurons.
Qijing Xie, Maria Brbic, Felix Horns, Sai Saroja Kolluru, Robert C Jones, Jiefu Li, Zhuoran Li, Colleen N McLaughlin, Tongchao Li, Liqun Luo, Hongjie Li

Elife· January 2021

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