Publications by authors named "Jochen Singer"

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Transcriptional changes in non-human primate tissues after intrathecal delivery of serotype 9 adeno-associated viral vector: Insights into organ toxicities.
Fumiaki Aihara, Matthew Mardo, Vera Ruda, Tony Del Rio, Karine Bigot, Jochen Singer

Mol Ther Methods Clin Dev· December 2025

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Phylogenetic inference reveals clonal heterogeneity in circulating tumor cell clusters.
David Gremmelspacher, Johannes Gawron, Barbara M Szczerba, Katharina Jahn, Francesc Castro-Giner, Jochen Singer

Nat Genet· June 2025

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Single-cell mutation calling and phylogenetic tree reconstruction with loss and recurrence.
Jack Kuipers, Jochen Singer, Niko Beerenwinkel

Bioinformatics· October 2022

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Multi-omics data integration reveals novel drug targets in hepatocellular carcinoma.
Christos Dimitrakopoulos, Sravanth Kumar Hindupur, Marco Colombi, Dritan Liko, Charlotte K Y Ng, Jochen Singer

BMC Genomics· August 2021

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Spatial Distribution of Private Gene Mutations in Clear Cell Renal Cell Carcinoma.
Ariane L Moore, Aashil A Batavia, Jack Kuipers, Jochen Singer, Elodie Burcklen

Cancers (Basel)· April 2021

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Clonal hematopoiesis in donors and long-term survivors of related allogeneic hematopoietic stem cell transplantation.
Steffen Boettcher, C Matthias Wilk, Jochen Singer, Fabian Beier, Elodie Burcklen

Blood· April 2020

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Bioinformatics for precision oncology.
Jochen Singer, Anja Irmisch, Hans-Joachim Ruscheweyh, Franziska Singer, Nora C Toussaint

Brief Bioinform· May 2019

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Neutrophils escort circulating tumour cells to enable cell cycle progression.
Barbara Maria Szczerba, Francesc Castro-Giner, Marcus Vetter, Ilona Krol, Sofia Gkountela, Jochen Singer

Nature· February 2019

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Single-cell mutation identification via phylogenetic inference.
Jochen Singer, Jack Kuipers, Katharina Jahn, Niko Beerenwinkel

Nat Commun· December 2018

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SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics.
Franziska Singer, Anja Irmisch, Nora C Toussaint, Linda Grob, Jochen Singer

BMC Med Inform Decis Mak· October 2018

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NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis.
Jochen Singer, Hans-Joachim Ruscheweyh, Ariane L Hofmann, Thomas Thurnherr, Franziska Singer

Bioinformatics· January 2018

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Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers.
Ariane L Hofmann, Jonas Behr, Jochen Singer, Jack Kuipers, Christian Beisel

BMC Bioinformatics· January 2017

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A Comprehensive Analysis of Primer IDs to Study Heterogeneous HIV-1 Populations.
David Seifert, Francesca Di Giallonardo, Armin Töpfer, Jochen Singer, Stefan Schmutz

J Mol Biol· January 2016

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Lambda: the local aligner for massive biological data.
Hannes Hauswedell, Jochen Singer, Knut Reinert

Bioinformatics· September 2014

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The Digital Bee Brain: Integrating and Managing Neurons in a Common 3D Reference System.
Jürgen Rybak, Anja Kuß, Hans Lamecker, Stefan Zachow, Hans-Christian Hege, Jochen Singer

Front Syst Neurosci· October 2012

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