Publications by authors named "John D Storey"

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Coancestry superposed on admixed populations yields measures of relatedness at individual-level resolution.
Danfeng Chen, John D Storey

PLoS Comput Biol· December 2025

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Identifying causal genotype-phenotype relationships for population-sampled parent-child trios.
Yushi Tang, Irineo Cabreros, John D Storey

bioRxiv· December 2024

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Coancestry superposed on admixed populations yields measures of relatedness at individual-level resolution.
Danfeng Chen, John D Storey

bioRxiv· December 2024

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Author Correction: Genome-wide real-time in vivo transcriptional dynamics during Plasmodium falciparum blood-stage development.
Heather J Painter, Neo Christopher Chung, Aswathy Sebastian, Istvan Albert, John D Storey

Nat Commun· March 2022

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The optimal discovery procedure for significance analysis of general gene expression studies.
Andrew J Bass, John D Storey

Bioinformatics· April 2021

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Modeling molecular development of breast cancer in canine mammary tumors.
Kiley Graim, Dmitriy Gorenshteyn, David G Robinson, Nicholas J Carriero, James A Cahill, John D Storey

Genome Res· February 2021

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The functional false discovery rate with applications to genomics.
Xiongzhi Chen, David G Robinson, John D Storey

Biostatistics· January 2021

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Estimating FST and kinship for arbitrary population structures.
Alejandro Ochoa, John D Storey

PLoS Genet· January 2021

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Extending Tests of Hardy-Weinberg Equilibrium to Structured Populations.
Wei Hao, John D Storey

Genetics· November 2019

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A Likelihood-Free Estimator of Population Structure Bridging Admixture Models and Principal Components Analysis.
Irineo Cabreros, John D Storey

Genetics· August 2019

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Genome-wide real-time in vivo transcriptional dynamics during Plasmodium falciparum blood-stage development.
Heather J Painter, Neo Christopher Chung, Aswathy Sebastian, Istvan Albert, John D Storey

Nat Commun· July 2018

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Scaling probabilistic models of genetic variation to millions of humans.
Prem Gopalan, Wei Hao, David M Blei, John D Storey

Nat Genet· December 2016

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Systems-level analysis of mechanisms regulating yeast metabolic flux.
Sean R Hackett, Vito R T Zanotelli, Wenxin Xu, Jonathan Goya, Junyoung O Park, John D Storey

Science· October 2016

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Probabilistic models of genetic variation in structured populations applied to global human studies.
Wei Hao, Minsun Song, John D Storey

Bioinformatics· March 2016

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A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays.
David G Robinson, Jean Y Wang, John D Storey

Nucleic Acids Res· November 2015

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Beyond the E-Value: Stratified Statistics for Protein Domain Prediction.
Alejandro Ochoa, John D Storey, Manuel Llinás, Mona Singh

PLoS Comput Biol· November 2015

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Testing for genetic associations in arbitrarily structured populations.
Minsun Song, Wei Hao, John D Storey

Nat Genet· May 2015

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Statistical significance of variables driving systematic variation in high-dimensional data.
Neo Christopher Chung, John D Storey

Bioinformatics· February 2015

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subSeq: determining appropriate sequencing depth through efficient read subsampling.
David G Robinson, John D Storey

Bioinformatics· December 2014

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Gene expression profiles associated with acute myocardial infarction and risk of cardiovascular death.
Jinhee Kim, Nima Ghasemzadeh, Danny J Eapen, Neo Christopher Chung, John D Storey

Genome Med· June 2014

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Identifying and mapping cell-type-specific chromatin programming of gene expression.
Troels T Marstrand, John D Storey

Proc Natl Acad Sci U S A· February 2014

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Design and analysis of Bar-seq experiments.
David G Robinson, Wei Chen, John D Storey, David Gresham

G3 (Bethesda)· January 2014

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Gene set bagging for estimating the probability a statistically significant result will replicate.
Andrew E Jaffe, John D Storey, Hongkai Ji, Jeffrey T Leek

BMC Bioinformatics· December 2013

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Understanding newsworthiness of an emerging pandemic: international newspaper coverage of the H1N1 outbreak.
Katherine C Smith, Rajiv N Rimal, Helena Sandberg, John D Storey, Lisa Lagasse

Influenza Other Respir Viruses· September 2013

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The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey

Bioinformatics· March 2012

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