Publications by authors named "John Herr"

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Cancer-oocyte SAS1B protein is expressed at the cell surface of multiple solid tumors and targeted with antibody-drug conjugates.
Arabinda Mandal, Jagathpala Shetty, Christine A Tran, Walter C Olson, Mriganka Mandal, John C Herr

J Immunother Cancer· March 2024

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On the use of real-world datasets for reaction yield prediction.
Mandana Saebi, Bozhao Nan, John E Herr, Jessica Wahlers, Zhichun Guo

Chem Sci· May 2023

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SPICE, A Dataset of Drug-like Molecules and Peptides for Training Machine Learning Potentials.
Peter Eastman, Pavan Kumar Behara, David L Dotson, Raimondas Galvelis, John E Herr

Sci Data· January 2023

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End-to-end differentiable construction of molecular mechanics force fields.
Yuanqing Wang, Josh Fass, Benjamin Kaminow, John E Herr, Dominic Rufa

Chem Sci· October 2022

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Compressing physics with an autoencoder: Creating an atomic species representation to improve machine learning models in the chemical sciences.
John E Herr, Kevin Koh, Kun Yao, John Parkhill

J Chem Phys· August 2019

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Metadynamics for training neural network model chemistries: A competitive assessment.
John E Herr, Kun Yao, Ryker McIntyre, David W Toth, John Parkhill

J Chem Phys· June 2018

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Evaluation of SAS1B as a target for antibody-drug conjugate therapy in the treatment of pancreatic cancer.
Kiley A Knapp, Eusebio S Pires, Sara J Adair, Arabinda Mandal, Anne M Mills, John C Herr

Oncotarget· February 2018

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The TensorMol-0.1 model chemistry: a neural network augmented with long-range physics.
Kun Yao, John E Herr, David W Toth, Ryker Mckintyre, John Parkhill

Chem Sci· February 2018

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Potent Pyrimidine and Pyrrolopyrimidine Inhibitors of Testis-Specific Serine/Threonine Kinase 2 (TSSK2).
Jon E Hawkinson, Rondedrick Sinville, Deepti Mudaliar, Jagathpala Shetty, Timothy Ward, John C Herr

ChemMedChem· November 2017

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Origin of the Size-Dependent Stokes Shift in CsPbBr Perovskite Nanocrystals.
Michael C Brennan, John E Herr, Triet S Nguyen-Beck, Jessica Zinna, Sergiu Draguta

J Am Chem Soc· September 2017

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Intrinsic Bond Energies from a Bonds-in-Molecules Neural Network.
Kun Yao, John E Herr, Seth N Brown, John Parkhill

J Phys Chem Lett· June 2017

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Correction: Membrane associated cancer-oocyte neoantigen SAS1B/ovastacin is a candidate immunotherapeutic target for uterine tumors.
Eusebio S Pires, Ryan S D'Souza, Marisa A Needham, Austin K Herr, Amir A Jazaeri, John C Herr

Oncotarget· February 2017

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The many-body expansion combined with neural networks.
Kun Yao, John E Herr, John Parkhill

J Chem Phys· January 2017

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Recombinant production of enzymatically active male contraceptive drug target hTSSK2 - Localization of the TSKS domain phosphorylated by TSSK2.
Jagathpala Shetty, Rondedrick Sinville, Igor A Shumilin, Wladek Minor, Jianhai Zhang, John C Herr

Protein Expr Purif· May 2016

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Plasminogen Improves Mouse IVF by Interactions with Inner Acrosomal Membrane-Bound MMP2 and SAMP14.
Marvin J S Ferrer, Wei Xu, Jagathpala Shetty, John Herr, Richard Oko

Biol Reprod· April 2016

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Membrane associated cancer-oocyte neoantigen SAS1B/ovastacin is a candidate immunotherapeutic target for uterine tumors.
Eusebio S Pires, Ryan S D'Souza, Marisa A Needham, Austin K Herr, Amir A Jazaeri, John C Herr

Oncotarget· October 2015

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Dynamic Changes in Equatorial Segment Protein 1 (SPESP1) Glycosylation During Mouse Spermiogenesis.
Viswanadhapalli Suryavathi, Subbarayalu Panneerdoss, Michael J Wolkowicz, Jagathpala Shetty, Nicholas E Sherman, John C Herr

Biol Reprod· May 2015

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Field testing Diorhabda elongata (Coleoptera: Chrysomelidae) from Crete, Greece, to assess potential impact on nontarget native California plants in the genus Frankenia.
John C Herr, Angelica M Herrera-Reddy, Raymond I Carruthers

Environ Entomol· June 2014

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SAS1B protein [ovastacin] shows temporal and spatial restriction to oocytes in several eutherian orders and initiates translation at the primary to secondary follicle transition.
Eusebio S Pires, Callie Hlavin, Ellen Macnamara, Khadijat Ishola-Gbenla, Christa Doerwaldt, Austin K Herr, John C Herr

Dev Dyn· December 2013

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Identification of unknown protein function using metabolite cocktail screening.
Igor A Shumilin, Marcin Cymborowski, Olga Chertihin, Kula N Jha, John C Herr

Structure· October 2012

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Confocal fluorescence microscopy in a murine model of microdissection testicular sperm extraction to improve sperm retrieval.
Ryan P Smith, Greg J Lowe, Parviz K Kavoussi, William D Steers, Raymond A Costabile, John C Herr

J Urol· May 2012

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Oocyte specific oolemmal SAS1B involved in sperm binding through intra-acrosomal SLLP1 during fertilization.
Monika Sachdev, Arabinda Mandal, Sabine Mulders, Laura C Digilio, Subbarayalu Panneerdoss, María Belén Herrero, John C Herr

Dev Biol· March 2012

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An isoimmune response to human sperm clathrin in an infertile woman with systemic lupus erythematosus.
Alina Domagala, Silvia Pulido, Marzena Kamieniczna, Maciej Kurpisz, John C Herr

J Reprod Immunol· April 2011

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CABYR binds to AKAP3 and Ropporin in the human sperm fibrous sheath.
Yan-Feng Li, Wei He, Arabinda Mandal, Young-Hwan Kim, Laura Digilio, John C Herr, John C Herr

Asian J Androl· March 2011

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CABYR isoforms expressed in late steps of spermiogenesis bind with AKAPs and ropporin in mouse sperm fibrous sheath.
Yan-Feng Li, Wei He, Young-Hwan Kim, Arabinda Mandal, Laura Digilio, John C Herr

Reprod Biol Endocrinol· August 2010

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