Publications by authors named "Juan D Chavez"

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Combining Quantitative Proteomics and Interactomics for a Deeper Insight into Molecular Differences between Human Cell Lines.
Anna A Bakhtina, Helisa H Wippel, Juan D Chavez, James E Bruce

J Proteome Res· December 2024

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Combining quantitative proteomics and interactomics for a deeper insight into molecular differences between human cell lines.
Anna A Bakhtina, Helisa H Wippel, Juan D Chavez, James E Bruce

bioRxiv· June 2024

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Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in the failing murine heart.
Arianne Caudal, Xiaoting Tang, Juan D Chavez, Andrew Keller, Jared P Mohr

Nat Cardiovasc Res· September 2022

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Differential Proteome and Interactome Analysis Reveal the Basis of Pleiotropy Associated With the Histidine Methyltransferase Hpm1p.
Tara K Bartolec, Joshua J Hamey, Andrew Keller, Juan D Chavez, James E Bruce

Mol Cell Proteomics· July 2022

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Improved Interpretation of Protein Conformational Differences and Ligand Occupancy in Large-Scale Cross-Link Data.
Andrew Keller, Anna A Bakhtina, Juan D Chavez, James E Bruce

J Proteome Res· June 2022

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Upregulation of mitochondrial ATPase inhibitory factor 1 (ATPIF1) mediates increased glycolysis in mouse hearts.
Bo Zhou, Arianne Caudal, Xiaoting Tang, Juan D Chavez, Timothy S McMillen

J Clin Invest· May 2022

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In-Cell Labeling and Mass Spectrometry for Systems-Level Structural Biology.
Juan D Chavez, Helisa H Wippel, Xiaoting Tang, Andrew Keller, James E Bruce

Chem Rev· April 2022

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Applications and advancements of FT-ICR-MS for interactome studies.
Juan D Chavez, Sung-Gun Park, Jared P Mohr, James E Bruce

Mass Spectrom Rev· March 2022

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Quantitative interactome analysis with chemical cross-linking and mass spectrometry.
Helisa H Wippel, Juan D Chavez, Xiaoting Tang, James E Bruce

Curr Opin Chem Biol· February 2022

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Multiplexed Isobaric Quantitative Cross-Linking Reveals Drug-Induced Interactome Changes in Breast Cancer Cells.
Helisa H Wippel, Juan D Chavez, Andrew D Keller, James E Bruce

Anal Chem· February 2022

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Multiplexed Cross-Linking with Isobaric Quantitative Protein Interaction Reporter Technology.
Juan D Chavez, Andrew Keller, Helisa H Wippel, Jared P Mohr, James E Bruce

Anal Chem· December 2021

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Characterizing environmental stress responses of aposymbiotic Astrangia poculata to divergent thermal challenges.
Daniel M Wuitchik, Adeline Almanzar, Brooke E Benson, Sara Brennan, Juan D Chavez

Mol Ecol· October 2021

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Deciphering the architecture and interactome of hnRNP proteins and enigmRBPs.
Helisa H Wippel, Mariana Fioramonte, Juan D Chavez, James E Bruce

Mol Omics· August 2021

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Crosslinking mass spectrometry: A link between structural biology and systems biology.
Xiaoting Tang, Helisa H Wippel, Juan D Chavez, James E Bruce

Protein Sci· April 2021

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Leveraging the Entirety of the Protein Data Bank to Enable Improved Structure Prediction Based on Cross-Link Data.
Andrew Keller, Juan D Chavez, Xiaoting Tang, James E Bruce

J Proteome Res· January 2021

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Isobaric Quantitative Protein Interaction Reporter Technology for Comparative Interactome Studies.
Juan D Chavez, Andrew Keller, Jared P Mohr, James E Bruce

Anal Chem· October 2020

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Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of Response to Graft Inoculation by .
John S Ramsey, Elizabeth L Chin, Juan D Chavez, Surya Saha, Darya Mischuk

J Proteome Res· June 2020

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Mitochondrial protein interaction landscape of SS-31.
Juan D Chavez, Xiaoting Tang, Matthew D Campbell, Gustavo Reyes, Philip A Kramer

Proc Natl Acad Sci U S A· June 2020

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Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of (L.) Osbeck Graft-Inoculated with " Liberibacter asiaticus".
Elizabeth L Chin, John S Ramsey, Darya O Mishchuk, Surya Saha, Elizabeth Foster, Juan D Chavez

J Proteome Res· February 2020

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In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of β-Lactamase Enzymes.
Xuefei Zhong, Xia Wu, Devin K Schweppe, Juan D Chavez, Martin Mathay

J Am Soc Mass Spectrom· February 2020

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Cellular Interactome Dynamics during Paclitaxel Treatment.
Juan D Chavez, Andrew Keller, Bo Zhou, Rong Tian, James E Bruce

Cell Rep· November 2019

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Prediction of an Upper Limit for the Fraction of Interprotein Cross-Links in Large-Scale In Vivo Cross-Linking Studies.
Andrew Keller, Juan D Chavez, Kevin C Felt, James E Bruce

J Proteome Res· August 2019

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Systems structural biology measurements by in vivo cross-linking with mass spectrometry.
Juan D Chavez, Jared P Mohr, Martin Mathay, Xuefei Zhong, Andrew Keller

Nat Protoc· August 2019

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First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.
Claudio Iacobucci, Christine Piotrowski, Ruedi Aebersold, Bruno C Amaral, Philip Andrews, Juan D Chavez

Anal Chem· June 2019

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Hsp90 middle domain phosphorylation initiates a complex conformational program to recruit the ATPase-stimulating cochaperone Aha1.
Wanping Xu, Kristin Beebe, Juan D Chavez, Marta Boysen, YinYing Lu

Nat Commun· June 2019

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