Publications by authors named "Surya Saha"

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Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing.
Teresa D Shippy, Prashant S Hosmani, Mirella Flores-Gonzalez, Marina Mann, Sherry Miller, Surya Saha

Gigascience· January 2024

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Differential gene expression of Asian citrus psyllids infected with ' Liberibacter asiaticus' reveals hyper-susceptibility to invasion by instar fourth-fifth and teneral adult stages.
Ruifeng He, Tonja W Fisher, Surya Saha, Kirsten Peiz-Stelinski, Mark A Willis

Front Plant Sci· August 2023

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A chromosome scale assembly of the tarnished plant bug, Lygus lineolaris (Palisot de Beauvois), genome.
O P Perera, Surya Saha, James Glover, Katherine A Parys, K Clint Allen

BMC Res Notes· June 2023

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Breedbase: a digital ecosystem for modern plant breeding.
Nicolas Morales, Alex C Ogbonna, Bryan J Ellerbrock, Guillaume J Bauchet, Titima Tantikanjana, Surya Saha

G3 (Bethesda)· July 2022

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Graph pangenome captures missing heritability and empowers tomato breeding.
Yao Zhou, Zhiyang Zhang, Zhigui Bao, Hongbo Li, Yaqing Lyu, Surya Saha

Nature· June 2022

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Lessons learned about the biology and genomics of Diaphorina citri infection with "Candidatus Liberibacter asiaticus" by integrating new and archived organ-specific transcriptome data.
Marina Mann, Surya Saha, Joseph M Cicero, Marco Pitino, Kathy Moulton

Gigascience· April 2022

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Annotation of Hox cluster and Hox cofactor genes in the Asian citrus psyllid, , reveals novel features.
Teresa D Shippy, Prashant S Hosmani, Mirella Flores-Gonzalez, Lukas A Mueller, Wayne B Hunter, Surya Saha

GigaByte· April 2022

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Annotation of putative circadian rhythm-associated genes in (Hemiptera: Liviidae).
Max Reynolds, Lucas de Oliveira, Chad Vosburg, Thomson Paris, Crissy Massimino, Surya Saha

GigaByte· April 2022

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Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood).
Surya Saha, K Clint Allen, Lukas A Mueller, Gadi V P Reddy, Omaththage P Perera

BMC Res Notes· March 2022

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Ubiquitin-proteasome pathway annotation in can reveal potential targets for RNAi-based pest management.
Will Tank, Teresa Shippy, Amanda Thate, Crissy Massimino, Prashant S Hosmani, Surya Saha

GigaByte· March 2022

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Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, .
Teresa D Shippy, Sherry Miller, Blessy Tamayo, Prashant S Hosmani, Mirella Flores-Gonzalez, Surya Saha

GigaByte· March 2022

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Annotation of glycolysis, gluconeogenesis, and trehaloneogenesis pathways provide insight into carbohydrate metabolism in the Asian citrus psyllid.
Blessy Tamayo, Kyle Kercher, Chad Vosburg, Crissy Massimino, Margaryta R Jernigan, Surya Saha

GigaByte· February 2022

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Genomic identification, annotation, and comparative analysis of Vacuolar-type ATP synthase subunits in .
Rebecca Grace, Crissy Massimino, Teresa D Shippy, Will Tank, Prashant S Hosmani, Surya Saha

GigaByte· February 2022

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Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes.
Surya Saha, Amanda M Cooksey, Anna K Childers, Monica F Poelchau, Fiona M McCarthy

Insects· August 2021

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Annotation of segmentation pathway genes in the Asian citrus psyllid, .
Sherry Miller, Teresa D Shippy, Prashant S Hosmani, Mirella Flores-Gonzalez, Lukas A Mueller, Surya Saha

GigaByte· July 2021

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Annotation of chitin biosynthesis genes in , the Asian citrus psyllid.
Sherry Miller, Teresa D Shippy, Blessy Tamayo, Prashant S Hosmani, Mirella Flores-Gonzalez, Surya Saha

GigaByte· June 2021

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characterization of chitin deacetylase genes in the genome.
Sherry Miller, Teresa D Shippy, Blessy Tamayo, Prashant S Hosmani, Mirella Flores-Gonzalez, Surya Saha

GigaByte· June 2021

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Annotation of genes in , the vector for Huanglongbing disease.
Crissy Massimino, Chad Vosburg, Teresa Shippy, Prashant S Hosmani, Mirella Flores-Gonzalez, Surya Saha

GigaByte· May 2021

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Utilizing a chromosomal-length genome assembly to annotate the Wnt signaling pathway in the Asian citrus psyllid, .
Chad Vosburg, Max Reynolds, Rita Noel, Teresa Shippy, Prashant S Hosmani, Surya Saha

GigaByte· May 2021

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Draft Genome Sequence Resource of the Citrus Stem-End Rot Fungal Pathogen CITRA15.
Qiaolin Zheng, Egem Ozbudak, Guohong Liu, Prashant S Hosmani, Surya Saha

Phytopathology· April 2021

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Undergraduate Virtual Engagement in Community Genome Annotation Provides Flexibility to Overcome Course Disruptions.
Surya Saha, Teresa D Shippy, Susan J Brown, Joshua B Benoit, Tom D'Elia

J Microbiol Biol Educ· March 2021

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NCBI's Virus Discovery Codeathon: Building "FIVE" -The Federated Index of Viral Experiments API Index.
Joan Martí-Carreras, Alejandro Rafael Gener, Sierra D Miller, Anderson F Brito, Christiam E Camacho, Surya Saha

Viruses· December 2020

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Development on Citrus medica infected with 'Candidatus Liberibacter asiaticus' has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts.
Laurynne C Coates, Jaclyn Mahoney, John S Ramsey, EricaRose Warwick, Richard Johnson, Surya Saha

PLoS One· November 2020

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Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding.
Xin Wang, Lei Gao, Chen Jiao, Stefanos Stravoravdis, Prashant S Hosmani, Surya Saha

Nat Commun· November 2020

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Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of Response to Graft Inoculation by .
John S Ramsey, Elizabeth L Chin, Juan D Chavez, Surya Saha, Darya Mischuk

J Proteome Res· June 2020

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