Publications by authors named "Kate Cook"

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Transcriptional benchmark dose modeling of ultraviolet radiation-induced genomic activation in mouse skin.
Sami S Qutob, Samantha P M Roesch, Sandy Smiley, Pascale V Bellier, Andrew Williams, Kate B Cook

Photochem Photobiol· November 2025

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Acquisition of Escherichia coli carrying extended-spectrum ß-lactamase and carbapenemase genes by hospitalised children with severe acute malnutrition in Niger.
Kirsty Sands, Aditya Kumar Lankapalli, Giulia Lai, Brekhna Hassan, Edward Ar Portal, Kate Cook

Nat Commun· August 2025

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Experiences of People with Aphasia Receiving Enhanced Community-Based Speech-Language Pathology Provided by Speech-Language Pathology Students.
Nicola Gibbons, Kate J Cook, Dean Sutherland, Gina Tillard

Folia Phoniatr Logop· April 2025

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Flies as carriers of antimicrobial resistant (AMR) bacteria in Nigerian hospitals: A workflow for surveillance of AMR bacteria carried by arthropod pests in hospital settings.
Kate Cook, Shonnette Premchand-Branker, Maria Nieto-Rosado, Edward A R Portal, Mei Li

Environ Int· February 2025

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A qualitative study of reflective practice in the workplace. Speech-language pathologists have their say.
Kate J Cook, Cheryl Messick, Carolyn Baylor, Megan J McAuliffe

Int J Speech Lang Pathol· October 2024

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Transcriptome analysis in mouse skin after exposure to ultraviolet radiation from a canopy sunbed.
Sami S Qutob, Samantha P M Roesch, Sandy Smiley, Pascale Bellier, Andrew Williams, Kate B Cook

Photochem Photobiol· September 2024

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The Triple Combination of Meropenem, Avibactam, and a Metallo-β-Lactamase Inhibitor Optimizes Antibacterial Coverage Against Different β-Lactamase Producers.
Zhuoren Ling, Alistair James Macdonald Farley, Aditya Lankapalli, Yanfang Zhang, Shonnette Premchand-Branker, Kate Cook

Engineering (Beijing)· July 2024

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"Take Us Into Account": Perspectives of Family Members of People With Parkinson's Disease Regarding Speech-Language Pathology Intervention.
Carolyn Baylor, Kate J Cook, Megan J McAuliffe

Am J Speech Lang Pathol· March 2024

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Written reflective practice abilities of SLT students across the degree programme.
Kate J Cook, Cheryl Messick, Megan J McAuliffe

Int J Lang Commun Disord· July 2023

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Combining viral genomics and clinical data to assess risk factors for severe COVID-19 (mortality, ICU admission, or intubation) amongst hospital patients in a large acute UK NHS hospital Trust.
Max Foxley-Marrable, Leon D'Cruz, Paul Meredith, Sharon Glaysher, Angela H Beckett, Kate F Cook

PLoS One· March 2023

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Multiple pathways of SARS-CoV-2 nosocomial transmission uncovered by integrated genomic and epidemiological analyses during the second wave of the COVID-19 pandemic in the UK.
Kate F Cook, Angela H Beckett, Sharon Glaysher, Salman Goudarzi, Christopher Fearn

Front Cell Infect Microbiol· February 2023

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Measuring significant changes in chromatin conformation with ACCOST.
Kate B Cook, Borislav H Hristov, Karine G Le Roch, Jean Philippe Vert, William Stafford Noble

Nucleic Acids Res· March 2020

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Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.
David F Read, Kate Cook, Yang Y Lu, Karine G Le Roch, William Stafford Noble

PLoS Comput Biol· September 2019

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Assessing and developing the written reflective practice skills of speech-language pathology students.
Kate Cook, Gina Tillard, Christine Wyles, Daniel Gerhard, Tika Ormond

Int J Speech Lang Pathol· February 2019

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Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages.
Evelien M Bunnik, Kate B Cook, Nelle Varoquaux, Gayani Batugedara, Jacques Prudhomme

Nat Commun· May 2018

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RNAcompete-S: Combined RNA sequence/structure preferences for RNA binding proteins derived from a single-step in vitro selection.
Kate B Cook, Shankar Vembu, Kevin C H Ha, Hong Zheng, Kaitlin U Laverty

Methods· August 2017

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The dynamic three-dimensional organization of the diploid yeast genome.
Seungsoo Kim, Ivan Liachko, Donna G Brickner, Kate Cook, William S Noble

Elife· May 2017

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The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation.
Inga Loedige, Leonhard Jakob, Thomas Treiber, Debashish Ray, Mathias Stotz, Kate B Cook

Cell Rep· November 2015

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Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition.
John D Laver, Xiao Li, Debashish Ray, Kate B Cook, Noah A Hahn

Genome Biol· May 2015

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Paralogs hnRNP L and hnRNP LL exhibit overlapping but distinct RNA binding constraints.
Sarah A Smith, Debashish Ray, Kate B Cook, Michael J Mallory, Timothy R Hughes

PLoS One· February 2015

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High-throughput characterization of protein-RNA interactions.
Kate B Cook, Timothy R Hughes, Quaid D Morris

Brief Funct Genomics· January 2015

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Determination and inference of eukaryotic transcription factor sequence specificity.
Matthew T Weirauch, Ally Yang, Mihai Albu, Atina G Cote, Alejandro Montenegro-Montero, Kate Cook

Cell· September 2014

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A compendium of RNA-binding motifs for decoding gene regulation.
Debashish Ray, Hilal Kazan, Kate B Cook, Matthew T Weirauch, Hamed S Najafabadi

Nature· July 2013

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RBPDB: a database of RNA-binding specificities.
Kate B Cook, Hilal Kazan, Khalid Zuberi, Quaid Morris, Timothy R Hughes

Nucleic Acids Res· January 2011

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