Publications by authors named "Kelley Yan"

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Morphogenesis and regeneration share a conserved core transition cell state program that controls lung epithelial cell fate.
Xiangyi Ke, Benjamin van Soldt, Lukas Vlahos, Yizhuo Zhou, Jun Qian, Kelley Yan

Dev Cell· September 2025

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Rapid and efficient protocol for optical clearing of mouse intestinal tissues for enhanced fluorescence imaging and 3D reconstruction.
Joel Johnson George, Sierra H Ball, Elena Wang, Remy T Schneider, Claudia Capdevila, Kelley S Yan

STAR Protoc· June 2025

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Morphogenesis and regeneration share a conserved core transition cell state program that controls lung epithelial cell fate.
Xiangyi Ke, Benjamin van Soldt, Lukas Vlahos, Yizhuo Zhou, Jun Qian, Kelley Yan

Dev Cell· March 2025

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FGF2 promotes the expansion of parietal mesothelial progenitor pools and inhibits BMP4-mediated smooth muscle cell differentiation.
Youngmin Hwang, Yuko Shimamura, Junichi Tanaka, Akihiro Miura, Anri Sawada, Kelley S Yan

Front Cell Dev Biol· September 2024

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Time-resolved fate mapping identifies the intestinal upper crypt zone as an origin of Lgr5+ crypt base columnar cells.
Claudia Capdevila, Jonathan Miller, Liang Cheng, Adam Kornberg, Joel J George, Kelley S Yan

Cell· June 2024

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Isthmus progenitor cells contribute to homeostatic cellular turnover and support regeneration following intestinal injury.
Ermanno Malagola, Alessandro Vasciaveo, Yosuke Ochiai, Woosook Kim, Biyun Zheng, Bryana Belin, Kelley S Yan

Cell· June 2024

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Microbial-Dependent Recruitment of Immature Myeloid Cells Promotes Intestinal Regeneration.
Zhengyu Jiang, Quin T Waterbury, Ermanno Malagola, Na Fu, Woosook Kim, Kelley S Yan

Cell Mol Gastroenterol Hepatol· February 2024

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Gluten induces rapid reprogramming of natural memory αβ and γδ intraepithelial T cells to induce cytotoxicity in celiac disease.
Adam Kornberg, Theo Botella, Christine S Moon, Samhita Rao, Jared Gelbs, Kelley S Yan

Sci Immunol· July 2023

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Immature myeloid cells are indispensable for intestinal regeneration post irradiation injury.
Zhengyu Jiang, Quin T Waterbury, Na Fu, Woosook Kim, Ermanno Malagola, Kelley S Yan

bioRxiv· March 2023

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Modeling Oral-Esophageal Squamous Cell Carcinoma in 3D Organoids.
Samuel Flashner, Cecilia Martin, Norihiro Matsuura, Masataka Shimonosono, Yasuto Tomita, Kelley Yan

J Vis Exp· December 2022

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R-SPONDIN2 mesenchymal cells form the bud tip progenitor niche during human lung development.
Renee F C Hein, Joshua H Wu, Emily M Holloway, Tristan Frum, Ansley S Conchola, Kelley S Yan

Dev Cell· July 2022

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Presentation of the Julius M. Friedenwald Medal to Timothy C. Wang, MD, AGAF.
Julian Abrams, Michael Camilleri, Juanita Merchant, Anil K Rustgi, Kelley Yan

Gastroenterology· June 2022

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Multiplexed single-cell analysis reveals prognostic and nonprognostic T cell types in human colorectal cancer.
Kazuya Masuda, Adam Kornberg, Jonathan Miller, Sijie Lin, Nathan Suek, Kelley S Yan

JCI Insight· April 2022

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Insulin-like Growth Factor-1 and mTORC1 Signaling Promote the Intestinal Regenerative Response After Irradiation Injury.
Natacha Bohin, Kevin P McGowan, Theresa M Keeley, Elizabeth A Carlson, Kelley S Yan

Cell Mol Gastroenterol Hepatol· November 2021

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Cellular origins and lineage relationships of the intestinal epithelium.
Claudia Capdevila, Maria Trifas, Jonathan Miller, Troy Anderson, Peter A Sims, Kelley S Yan

Am J Physiol Gastrointest Liver Physiol· October 2021

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3D Organoids: An Untapped Platform for Studying Host-Microbiome Interactions in Esophageal Cancers.
Samuel Flashner, Kelley S Yan, Hiroshi Nakagawa

Microorganisms· October 2021

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Epidermal-Derived Hedgehog Signaling Drives Mesenchymal Proliferation during Digit Tip Regeneration.
Zeshaan N Maan, Yuval Rinkevich, Janos Barrera, Kellen Chen, Dominic Henn, Kelley Yan

J Clin Med· September 2021

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COVID-19 Gastrointestinal Symptoms and Attenuation of the Immune Response to SARS-CoV-2.
Jonathan Miller, Kelley S Yan

Gastroenterology· June 2021

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Single-Cell Transcriptional Profiling of the Intestinal Epithelium.
Claudia Capdevila, Ruben I Calderon, Erin C Bush, Kismet Sheldon-Collins, Peter A Sims, Kelley S Yan

Methods Mol Biol· March 2021

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Single-Cell Studies of Intestinal Stem Cell Heterogeneity During Homeostasis and Regeneration.
Maxim Norkin, Claudia Capdevila, Ruben I Calderon, Tianhong Su, Maria Trifas, Kelley S Yan

Methods Mol Biol· March 2021

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Prox1-positive cells monitor and sustain the murine intestinal epithelial cholinergic niche.
Moritz Middelhoff, Henrik Nienhüser, Giovanni Valenti, H Carlo Maurer, Yoku Hayakawa, Kelley S Yan

Nat Commun· January 2020

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BHLHA15-Positive Secretory Precursor Cells Can Give Rise to Tumors in Intestine and Colon in Mice.
Yoku Hayakawa, Mayo Tsuboi, Samuel Asfaha, Hiroto Kinoshita, Ryota Niikura, Kelley S Yan

Gastroenterology· March 2019

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Intestinal Crypts Assume the Fetal Position in Response to Injury.
Adam R Pont, Kelley S Yan

Cell Stem Cell· August 2018

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Dclk1-expressing tuft cells: critical modulators of the intestinal niche?
Moritz Middelhoff, C Benedikt Westphalen, Yoku Hayakawa, Kelley S Yan, Michael D Gershon

Am J Physiol Gastrointest Liver Physiol· October 2017

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Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity.
Kelley S Yan, Olivier Gevaert, Grace X Y Zheng, Benedict Anchang, Christopher S Probert

Cell Stem Cell· July 2017

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