Publications by authors named "Krishna R"

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High-throughput screening identifies the activity of histone deacetylase inhibitors in patient-derived models of soft tissue sarcoma.
Molly R Danks, Piotr J Manasterski, Henry Beetham, John C Dawson, Richard J R Elliott

Cancer Biol Ther· December 2025

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Computational design of metallohydrolases.
Donghyo Kim, Seth M Woodbury, Woody Ahern, Doug Tischer, Alex Kang

Nature· December 2025

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Atom-level enzyme active site scaffolding using RFdiffusion2.
Woody Ahern, Jason Yim, Doug Tischer, Saman Salike, Seth M Woodbury

Nat Methods· December 2025

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Achieving high-performance acetylene/carbon dioxide separation via green and scalable synthesis of high-density cobalt-based MOF.
Xiao-Xia Zhang, Jie Zhang, Yan-Mei Dao, Rajamani Krishna, Jia-Long Zhao

J Colloid Interface Sci· December 2025

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Prediction and Assessment of Anticancer, Antiproliferative, Pharmacokinetic Properties, and Human Serum Albumin Binding Propensity of a New Bioactive Marine Cyclic Dipeptide from Exiguobacterium profundum.
Sriram Shankar, Diksha Tripathi, Subhashree Subhasmita Nayak, Ramadas Krishna, Natarajan Sakthivel

Mar Biotechnol (NY)· December 2025

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CellPhenoX: An Explainable Machine Learning Method for Identifying Cell Phenotypes To Predict Clinical Outcomes from Single-Cell Multi-Omics.
Jade Young, Jun Inamo, Zachary Caterer, Revanth Krishna, Fan Zhang

Adv Sci (Weinh)· November 2025

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Design of All-atom Biomolecular Interactions with RFdiffusion3.
Jasper Butcher, Rohith Krishna, Raktim Mitra, Rafael I Brent, Yanjing Li

bioRxiv· November 2025

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Exploring phage-host interactions in complex bacterium to reveal host factors and phage resistance genes using CRISPRi functional genomics and transcriptomics.
Ben Diaz, Rohan Krishna, Joseph S Schoeniger, Catherine M Mageeney

Microbiol Spectr· November 2025

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Modeling protein-small molecule conformational ensembles with PLACER.
Ivan Anishchenko, Yakov Kipnis, Indrek Kalvet, Guangfeng Zhou, Rohith Krishna

Proc Natl Acad Sci U S A· November 2025

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Artificial intelligence, structural, and immunoinformatics-driven multi-epitope vaccine design targeting non-structural proteins of West Nile Virus.
Rahul Mallick, Guneswar Sethi, Satyanarayan Sethi, Jeong Ho Hwang, Ramadas Krishna

In Silico Pharmacol· November 2025

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US FDA's Strategic Transition of Animal to Non-Animal Alternatives for Monoclonal Antibody Development: A Much Needed Fuel to Incentivize Innovation.
Rajesh Krishna

J Clin Pharmacol· November 2025

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Non-surgical management of Ameloblastoma: A proof of concept study exploring the immunohistochemical expression of immune checkpoint Programmed Death Ligand- 1 in Ameloblastoma.
Revathi Krishna, Aadithya B Urs, Jeyaseelan Augustine, Priya Kumar

J Stomatol Oral Maxillofac Surg· November 2025

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Detect pre-cancerous tongue lesions for early oral cancer diagnosis using deep learning algorithm.
T Benil, Raji Krishna, Tulasi Prasad Sariki, P Yashika, Saanjhi Saraogi

Sci Rep· November 2025

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Has Pharmacologic Contextualization Become a Lost Art? How Can We Revive the Integrator Pharmacologist?
Rajesh Krishna

J Clin Pharmacol· November 2025

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U.S. funding cuts and the future of disaster mental health in the Asia Pacific.
Zui C Narita, Revathi N Krishna, Michael Wright, Jaya A R Dantas, Elizabeth A Newnham

Asian J Psychiatr· October 2025

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Commentary on "the oral and maxillofacial manifestations of stickler syndrome: A systematic review".
Rezhat Abbas, Aarushi Garg, Revathi Krishna

J Stomatol Oral Maxillofac Surg· October 2025

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Diagnostic Accuracy of the Madras Head Injury Prognostication Scale (MHIPS) in Predicting Mortality among Traumatic Brain Injury Patients.
Nikhil Reddy Y, Devendra Prasad K J, Krishna Moorthy D G S R, Rajesh K, Aravind S R

Asian J Neurosurg· September 2025

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Generating functional and multistate proteins with a multimodal diffusion transformer.
Bowen Jing, Anna Sappington, Mihir Bafna, Ravi Shah, Adrina Tang

bioRxiv· September 2025

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design of phospho-tyrosine peptide binders.
Magnus S Bauer, Jason Z Zhang, Kejia Wu, Gyu Rie Lee, Brian Coventry

bioRxiv· September 2025

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Photonic crystal microring resonators on a hybrid silicon nitride-on-lithium niobate platform.
Zhongdi Peng, Rakesh Krishna, Xi Wu, Amir H Hosseinnia, Tianren Fan

Opt Lett· August 2025

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Accelerating Biomolecular Modeling with AtomWorks and RF3.
Nathaniel Corley, Simon Mathis, Rohith Krishna, Magnus S Bauer, Tuscan R Thompson

bioRxiv· August 2025

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STEAM: Spatial Transcriptomics Evaluation Algorithm and Metric for clustering performance.
Samantha Reynoso, Courtney Schiebout, Revanth Krishna, Fan Zhang

Brief Bioinform· August 2025

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Preliminary Results of Phenotype Characterisation for Cerebellar Ataxia using Automated Lower Limb Assessment.
Sahan Dissanayake, Ragil Krishna, Pubudu N Pathirana, Malcolm K Horne, David J Szmulewicz

Annu Int Conf IEEE Eng Med Biol Soc· July 2025

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A Novel Approach to Differential Expression Analysis of Co-Occurrence Networks for Small-Sampled Microbiome Data.
Nandini Gadhia, Michalis Smyrnakis, Po-Yu Liu, Damer Blake, Melanie Hay

IEEE Trans Comput Biol Bioinform· January 2025

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A Case of Hypoxemia with an Unusual Twist?
Elena Vlachos, Rahul Argula, Rachana Krishna

Ann Am Thorac Soc· January 2025

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