Publications by authors named "Laxmi Parida"

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Probing omics data via harmonic persistent homology.
Davide Gurnari, Aldo Guzmán-Sáenz, Filippo Utro, Aritra Bose, Saugata Basu, Laxmi Parida

Sci Rep· November 2025

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A foundation model for learning genetic associations from brain imaging phenotypes.
Diego Machado Reyes, Myson Burch, Laxmi Parida, Aritra Bose

Bioinform Adv· August 2025

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How quantum computing can enhance biomarker discovery.
Frederik F Flöther, Daniel Blankenberg, Maria Demidik, Karl Jansen, Raga Krishnakumar, Laxmi Parida

Patterns (N Y)· June 2025

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SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx.
Cameron Martino, Benjamin P Kellman, Daniel R Sandoval, Thomas Mandel Clausen, Robert Cooper, Laxmi Parida

mBio· April 2025

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Biological databases in the age of generative artificial intelligence.
Mihai Pop, Teresa K Attwood, Judith A Blake, Philip E Bourne, Ana Conesa, Laxmi Parida

Bioinform Adv· March 2025

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Developmental mosaicism underlying EGFR-mutant lung cancer presenting with multiple primary tumors.
Risa Burr, Ignaty Leshchiner, Christina L Costantino, Martin Blohmer, Tilak Sundaresan, Laxmi Parida

Nat Cancer· November 2024

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AutoXAI4Omics: an automated explainable AI tool for omics and tabular data.
James Strudwick, Laura-Jayne Gardiner, Kate Denning-James, Niina Haiminen, Ashley Evans, Laxmi Parida

Brief Bioinform· November 2024

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Matrix sketching framework for linear mixed models in association studies.
Myson Burch, Aritra Bose, Gregory Dexter, Laxmi Parida, Petros Drineas

Genome Res· October 2024

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How can quantum computing be applied in clinical trial design and optimization?
Hakan Doga, Aritra Bose, M Emre Sahin, Joao Bettencourt-Silva, Anh Pham, Laxmi Parida

Trends Pharmacol Sci· October 2024

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Epidemiological topology data analysis links severe COVID-19 to RAAS and hyperlipidemia associated metabolic syndrome conditions.
Daniel Platt, Aritra Bose, Kahn Rhrissorrakrai, Chaya Levovitz, Laxmi Parida

Bioinformatics· June 2024

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AI-enabled evaluation of genome-wide association relevance and polygenic risk score prediction in Alzheimer's disease.
Daniel E Platt, Aldo Guzmán-Sáenz, Aritra Bose, Subrata Saha, Filippo Utro, Laxmi Parida

iScience· March 2024

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Allosteric PI3Kα Inhibition Overcomes On-target Resistance to Orthosteric Inhibitors Mediated by Secondary PIK3CA Mutations.
Andreas Varkaris, Ferran Fece de la Cruz, Elizabeth E Martin, Bryanna L Norden, Nicholas Chevalier, Laxmi Parida

Cancer Discov· February 2024

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Latent human herpesvirus 6 is reactivated in CAR T cells.
Caleb A Lareau, Yajie Yin, Katie Maurer, Katalin D Sandor, Bence Daniel, Laxmi Parida

Nature· November 2023

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Germline mutations and developmental mosaicism underlying -mutant lung cancer.
Risa Burr, Ignaty Leshchiner, Christina L Costantino, Martin Blohmer, Tilak Sundaresan, Laxmi Parida

medRxiv· September 2023

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Genetic events associated with venetoclax resistance in CLL identified by whole-exome sequencing of patient samples.
Jasneet Kaur Khalsa, Justin Cha, Filippo Utro, Aishath Naeem, Ishwarya Murali, Laxmi Parida

Blood· August 2023

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Clinical Importance of the lncRNA NEAT1 in Cancer Patients Treated with Immune Checkpoint Inhibitors.
Joseph Toker, J Bryan Iorgulescu, Alexander L Ling, Genaro R Villa, Josephina A M A Gadet, Laxmi Parida

Clin Cancer Res· June 2023

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Pirtobrutinib targets BTK C481S in ibrutinib-resistant CLL but second-site BTK mutations lead to resistance.
Aishath Naeem, Filippo Utro, Qing Wang, Justin Cha, Mauno Vihinen, Laxmi Parida

Blood Adv· May 2023

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Lesion Shedding Model: unraveling site-specific contributions to ctDNA.
Kahn Rhrissorrakrai, Filippo Utro, Chaya Levovitz, Laxmi Parida

Brief Bioinform· March 2023

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Correction: A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones.
Filippo Utro, Chaya Levovitz, Kahn Rhrissorrakrai, Laxmi Parida

BMC Genomics· January 2023

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Evolutionary history of transformation from chronic lymphocytic leukemia to Richter syndrome.
Erin M Parry, Ignaty Leshchiner, Romain Guièze, Connor Johnson, Eugen Tausch, Laxmi Parida

Nat Med· January 2023

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Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.
Justin P Shaffer, Louis-Félix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Laxmi Parida

Nat Microbiol· December 2022

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FairPRS: adjusting for admixed populations in polygenic risk scores using invariant risk minimization.
Diego Machado Reyes, Aritra Bose, Ehud Karavani, Laxmi Parida

Pac Symp Biocomput· December 2022

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Molecular map of chronic lymphocytic leukemia and its impact on outcome.
Binyamin A Knisbacher, Ziao Lin, Cynthia K Hahn, Ferran Nadeu, Martí Duran-Ferrer, Laxmi Parida

Nat Genet· November 2022

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Topology and redescriptions detect multiple alternative biological pathways from clinical phenotypes.
Negin Karisani, Daniel E Platt, Saugata Basu, Laxmi Parida

Exp Biol Med (Maywood)· November 2022

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Distinct cellular dynamics associated with response to CAR-T therapy for refractory B cell lymphoma.
Nicholas J Haradhvala, Mark B Leick, Katie Maurer, Satyen H Gohil, Rebecca C Larson, Laxmi Parida

Nat Med· September 2022

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