Publications by authors named "Mark S Chee"

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Epitope-resolved profiling of the SARS-CoV-2 antibody response identifies cross-reactivity with endemic human coronaviruses.
Jason T Ladner, Sierra N Henson, Annalee S Boyle, Anna L Engelbrektson, Zane W Fink, Mark S Chee

Cell Rep Med· January 2021

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Epitope-resolved profiling of the SARS-CoV-2 antibody response identifies cross-reactivity with an endemic human CoV.
Jason T Ladner, Sierra N Henson, Annalee S Boyle, Anna L Engelbrektson, Zane W Fink, Mark S Chee

bioRxiv· July 2020

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National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant Lesions.
Jacob Kagan, Robert L Moritz, Richard Mazurchuk, Je Hyuk Lee, Peter Vasili Kharchenko, Mark S Chee

J Proteome Res· May 2020

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High-resolution analysis and functional mapping of cleavage sites and substrate proteins of furin in the human proteome.
Sergey A Shiryaev, Andrei V Chernov, Vladislav S Golubkov, Elliot R Thomsen, Eugene Chudin, Mark S Chee

PLoS One· June 2013

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A highly scalable peptide-based assay system for proteomics.
Igor A Kozlov, Elliot R Thomsen, Sarah E Munchel, Patricia Villegas, Petr Capek, Mark S Chee

PLoS One· November 2012

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New details of HCV NS3/4A proteinase functionality revealed by a high-throughput cleavage assay.
Sergey A Shiryaev, Elliot R Thomsen, Piotr Cieplak, Eugene Chudin, Anton V Cheltsov, Mark S Chee

PLoS One· September 2012

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Detection of low prevalence somatic mutations in solid tumors with ultra-deep targeted sequencing.
Olivier Harismendy, Richard B Schwab, Lei Bao, Jeff Olson, Sophie Rozenzhak, Mark S Chee

Genome Biol· December 2011

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FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data.
Andrea Sboner, Lukas Habegger, Dorothee Pflueger, Stephane Terry, David Z Chen, Mark S Chee

Genome Biol· June 2011

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Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing.
Dorothee Pflueger, Stéphane Terry, Andrea Sboner, Lukas Habegger, Raquel Esgueva, Mark S Chee

Genome Res· January 2011

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Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing.
Daniel Summerer, Haiguo Wu, Bettina Haase, Yang Cheng, Nadine Schracke, Mark S Chee

Genome Res· September 2009

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N-myc downstream regulated gene 1 (NDRG1) is fused to ERG in prostate cancer.
Dorothee Pflueger, David S Rickman, Andrea Sboner, Sven Perner, Christopher J LaFargue, Mark S Chee

Neoplasia· August 2009

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A second generation human haplotype map of over 3.1 million SNPs.

Nature· October 2007

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Genome-wide detection and characterization of positive selection in human populations.
Pardis C Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Mark S Chee, Lap-Chee Tsui

Nature· October 2007

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Highly parallel genomic assays.
Jian-Bing Fan, Mark S Chee, Kevin L Gunderson

Nat Rev Genet· August 2006

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High-throughput DNA methylation profiling using universal bead arrays.
Marina Bibikova, Zhenwu Lin, Lixin Zhou, Eugene Chudin, Eliza Wickham Garcia, Mark S Chee

Genome Res· March 2006

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A genome-wide scalable SNP genotyping assay using microarray technology.
Kevin L Gunderson, Frank J Steemers, Grace Lee, Leo G Mendoza, Mark S Chee

Nat Genet· May 2005

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A novel, high-performance random array platform for quantitative gene expression profiling.
Kenneth Kuhn, Shawn C Baker, Eugene Chudin, Minh-Ha Lieu, Steffen Oeser, Mark S Chee

Genome Res· November 2004

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A highly informative SNP linkage panel for human genetic studies.
Sarah Shaw Murray, Arnold Oliphant, Richard Shen, Celeste McBride, Rhoberta J Steeke, Mark S Chee

Nat Methods· November 2004

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Decoding randomly ordered DNA arrays.
Kevin L Gunderson, Semyon Kruglyak, Michael S Graige, Francisco Garcia, Bahram G Kermani, Mark S Chee

Genome Res· May 2004

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A versatile assay for high-throughput gene expression profiling on universal array matrices.
Jian-Bing Fan, Joanne M Yeakley, Marina Bibikova, Eugene Chudin, Eliza Wickham, Mark S Chee

Genome Res· May 2004

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Efficient strategies for the conjugation of oligonucleotides to antibodies enabling highly sensitive protein detection.
Igor A Kozlov, Peter C Melnyk, Katie E Stromsborg, Mark S Chee, David L Barker

Biopolymers· April 2004

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BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping.
Arnold Oliphant, David L Barker, John R Stuelpnagel, Mark S Chee

Biotechniques· June 2002

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Profiling alternative splicing on fiber-optic arrays.
Joanne M Yeakley, Jian-Bing Fan, Dennis Doucet, Lin Luo, Eliza Wickham, Mark S Chee

Nat Biotechnol· April 2002

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