Publications by authors named "Matthew Gazzara"

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The exon junction complex coordinates the cotranscriptional inclusion of blocks of neighboring exons.
Alexandra Bergfort, Jackson M Gordon, Matthew R Gazzara, Chuan-Tien Hung, Benhur Lee

Genes Dev· January 2026

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A deep dive into statistical modeling of RNA splicing QTLs reveals variants that explain neurodegenerative disease.
David Wang, Matthew R Gazzara, San Jewell, Benjamin D Wales-McGrath, Kevin Yang

Am J Hum Genet· December 2025

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Integrative analysis of RNA binding proteins identifies DDX55 as a novel regulator of 3'UTR isoform diversity.
Matthew R Gazzara, Timothy Cater, Michael J Mallory, Yoseph Barash, Kristen W Lynch

Genome Biol· November 2025

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Integrative analysis of RNA binding proteins identifies DDX55 as a novel regulator of 3'UTR isoform diversity.
Matthew R Gazzara, Timothy Cater, Michael J Mallory, Yoseph Barash, Kristen W Lynch

bioRxiv· May 2025

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An anciently diverged family of RNA binding proteins maintain correct splicing of a class of ultra-long exons through cryptic splice site repression.
Chileleko Siachisumo, Sara Luzzi, Saad Aldalaqan, Gerald Hysenaj, Caroline Dalgliesh, Matthew R Gazzara

Elife· October 2024

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A Deep Dive into Statistical Modeling of RNA Splicing QTLs Reveals New Variants that Explain Neurodegenerative Disease.
David Wang, Matthew R Gazzara, San Jewell, Benjamin Wales-McGrath, Christopher D Brown

bioRxiv· September 2024

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Alternative 3'UTR expression induced by T cell activation is regulated in a temporal and signal dependent manner.
Davia Blake, Matthew R Gazzara, Isabel Breuer, Max Ferretti, Kristen W Lynch

Sci Rep· May 2024

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Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.
Sam Bryce-Smith, Dominik Burri, Matthew R Gazzara, Christina J Herrmann, Weronika Danecka

RNA· December 2023

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Structural basis for high-order complex of SARNP and DDX39B to facilitate mRNP assembly.
Yihu Xie, Shengyan Gao, Ke Zhang, Prasanna Bhat, Bradley P Clarke, Matthew Gazzara

Cell Rep· August 2023

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Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.
Sam Bryce-Smith, Dominik Burri, Matthew R Gazzara, Christina J Herrmann, Weronika Danecka

bioRxiv· June 2023

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Influenza virus mRNAs encode determinants for nuclear export via the cellular TREX-2 complex.
Prasanna Bhat, Vasilisa Aksenova, Matthew Gazzara, Emily A Rex, Sadaf Aslam

Nat Commun· April 2023

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Alternative splicing of HDAC7 regulates its interaction with 14-3-3 proteins to alter histone marks and target gene expression.
Laura M Agosto, Michael J Mallory, Max B Ferretti, Davia Blake, Keegan S Krick, Matthew R Gazzara

Cell Rep· March 2023

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Alternative splicing of apoptosis genes promotes human T cell survival.
Davia Blake, Caleb M Radens, Max B Ferretti, Matthew R Gazzara, Kristen W Lynch

Elife· October 2022

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CYP11B1 variants influence skeletal maturation via alternative splicing.
Olja Grgic, Matthew R Gazzara, Alessandra Chesi, Carolina Medina-Gomez, Diana L Cousminer

Commun Biol· November 2021

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Analysis of scientific society honors reveals disparities.
Trang T Le, Daniel S Himmelstein, Ariel A Hippen, Matthew R Gazzara, Casey S Greene

Cell Syst· September 2021

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Reciprocal regulation of hnRNP C and CELF2 through translation and transcription tunes splicing activity in T cells.
Michael J Mallory, Sean P McClory, Rakesh Chatrikhi, Matthew R Gazzara, Robert J Ontiveros

Nucleic Acids Res· June 2020

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Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19.
Mukta Asnani, Katharina E Hayer, Ammar S Naqvi, Sisi Zheng, Scarlett Y Yang, Matthew R Gazzara

Leukemia· April 2020

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Deep profiling and custom databases improve detection of proteoforms generated by alternative splicing.
Laura M Agosto, Matthew R Gazzara, Caleb M Radens, Simone Sidoli, Josue Baeza

Genome Res· December 2019

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RNA Binding Protein CELF2 Regulates Signal-Induced Alternative Polyadenylation by Competing with Enhancers of the Polyadenylation Machinery.
Rakesh Chatrikhi, Michael J Mallory, Matthew R Gazzara, Laura M Agosto, Wandi S Zhu

Cell Rep· September 2019

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Aberrant splicing in B-cell acute lymphoblastic leukemia.
Kathryn L Black, Ammar S Naqvi, Mukta Asnani, Katharina E Hayer, Scarlett Y Yang, Matthew R Gazzara

Nucleic Acids Res· January 2019

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An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning.
Ingrid Ehrmann, James H Crichton, Matthew R Gazzara, Katherine James, Yilei Liu

Elife· January 2019

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Aberrant splicing in B-cell acute lymphoblastic leukemia.
Kathryn L Black, Ammar S Naqvi, Mukta Asnani, Katharina E Hayer, Scarlett Y Yang, Matthew R Gazzara

Nucleic Acids Res· November 2018

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Poly(C)-Binding Protein Pcbp2 Enables Differentiation of Definitive Erythropoiesis by Directing Functional Splicing of the Runx1 Transcript.
Louis R Ghanem, Andrew Kromer, Ian M Silverman, Xinjun Ji, Matthew Gazzara

Mol Cell Biol· August 2018

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Co-regulatory activity of hnRNP K and NS1-BP in influenza and human mRNA splicing.
Matthew G Thompson, Raquel Muñoz-Moreno, Prasanna Bhat, Renat Roytenberg, John Lindberg, Matthew R Gazzara

Nat Commun· June 2018

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