Publications by authors named "Matthew Zane"

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Breaking the reproducibility barrier with standardized protocols for plant-microbiome research.
Vlastimil Novak, Peter F Andeer, Eoghan King, Jacob Calabria, Connor Fitzpatrick, Matthew Zane

PLoS Biol· September 2025

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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.
Avinash Sreedasyam, Christopher Plott, Md Shakhawat Hossain, John T Lovell, Jane Grimwood, Matthew Zane

Nucleic Acids Res· September 2023

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Genomic prediction of switchgrass winter survivorship across diverse lowland populations.
Neal W Tilhou, Hari P Poudel, John Lovell, Sujan Mamidi, Jeremy Schmutz, Matthew Zane

G3 (Bethesda)· March 2023

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High-resolution mapping reveals hotspots and sex-biased recombination in Populus trichocarpa.
Chanaka Roshan Abeyratne, David Macaya-Sanz, Ran Zhou, Kerrie W Barry, Christopher Daum, Matthew Zane

G3 (Bethesda)· January 2023

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Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.
John T Lovell, Alice H MacQueen, Sujan Mamidi, Jason Bonnette, Jerry Jenkins, Matthew Zane

Nature· February 2021

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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.
Noe Fernandez-Pozo, Fabian B Haas, Rabea Meyberg, Kristian K Ullrich, Manuel Hiss, Matthew Zane

Plant J· April 2020

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Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001.
Caleb Walker, Seunghyun Ryu, Sajeet Haridas, Hyunsoo Na, Matthew Zane

Microbiol Resour Announc· February 2020

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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.
Volkan Sevim, Juna Lee, Robert Egan, Alicia Clum, Hope Hundley, Matthew Zane

Sci Data· November 2019

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Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates.
Caleb Walker, Seunghyun Ryu, Hyunsoo Na, Matthew Zane, Kurt LaButti

Microbiol Resour Announc· September 2018

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Next generation sequencing data of a defined microbial mock community.
Esther Singer, Bill Andreopoulos, Robert M Bowers, Janey Lee, Shweta Deshpande, Matthew Zane

Sci Data· September 2016

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Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis.
Jay W Kim, Susan H Brawley, Simon Prochnik, Mansi Chovatia, Jane Grimwood, Matthew Zane

PLoS One· August 2016

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Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951.
Merje Toome, Alan Kuo, Bernard Henrissat, Anna Lipzen, Andrew Tritt, Matthew Zane

Genome Announc· June 2014

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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives.
Steven D Brown, Dawn M Klingeman, Courtney M Johnson, Alicia Clum, Andrea Aerts, Matthew Zane

Genome Announc· June 2013

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