Publications by authors named "Michael Rappe"

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A high-resolution diel survey of surface ocean metagenomes, metatranscriptomes, and transfer RNA transcripts.
Sarah J Tucker, Jessika Füssel, Kelle C Freel, Evan Kiefl, Evan B Freel

Sci Data· December 2025

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New SAR11 isolate genomes and global marine metagenomes resolve ecologically relevant units within the Pelagibacterales.
Kelle C Freel, Sarah J Tucker, Evan B Freel, Ulrich Stingl, Stephen J Giovannoni

Nat Commun· December 2025

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Habitat-specificity in SAR11 is associated with a few genes under high selection.
Sarah J Tucker, Kelle C Freel, A Murat Eren, Michael S Rappé

ISME J· January 2025

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Editorial: Insights in aquatic microbiology: 2023.
Jin Zhou, Michael Rappe

Front Microbiol· October 2024

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Isolate-anchored comparisons reveal evolutionary and functional differentiation across SAR86 marine bacteria.
Oscar Ramfelt, Kelle C Freel, Sarah J Tucker, Olivia D Nigro, Michael S Rappé

ISME J· January 2024

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Life strategies for Aminicenantia in subseafloor oceanic crust.
Anne E Booker, Timothy D'Angelo, Annabelle Adams-Beyea, Julia M Brown, Olivia Nigro

ISME J· September 2023

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Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution.
Evan Kiefl, Ozcan C Esen, Samuel E Miller, Kourtney L Kroll, Amy D Willis

Sci Adv· February 2023

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Spatial and temporal dynamics of SAR11 marine bacteria across a nearshore to offshore transect in the tropical Pacific Ocean.
Sarah J Tucker, Kelle C Freel, Elizabeth A Monaghan, Clarisse E S Sullivan, Oscar Ramfelt

PeerJ· November 2021

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Insights into the Cultured Bacterial Fraction of Corals.
Michael Sweet, Helena Villela, Tina Keller-Costa, Rodrigo Costa, Stefano Romano

mSystems· June 2021

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Ecophysiology of the Cosmopolitan OM252 Bacterioplankton ().
Emily R Savoie, V Celeste Lanclos, Michael W Henson, Chuankai Cheng, Eric W Getz

mSystems· June 2021

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Isolation of SAR11 Marine Bacteria from Cryopreserved Seawater.
Elizabeth A Monaghan, Kelle C Freel, Michael S Rappé

mSystems· December 2020

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Metabolic strategies of marine subseafloor Chloroflexi inferred from genome reconstructions.
Maeva Fincker, Julie A Huber, Victoria J Orphan, Michael S Rappé, Andreas Teske

Environ Microbiol· August 2020

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Sampling of basement fluids via Circulation Obviation Retrofit Kits (CORKs) for dissolved gases, fluid fixation at the seafloor, and the characterization of organic carbon.
Huei-Ting Lin, Chih-Chiang Hsieh, Daniel J Repeta, Michael S Rappé

MethodsX· August 2020

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Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade.
Tom O Delmont, Evan Kiefl, Ozsel Kilinc, Ozcan C Esen, Ismail Uysal

Elife· September 2019

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Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere.
Stephanie A Carr, Sean P Jungbluth, Emiley A Eloe-Fadrosh, Ramunas Stepanauskas, Tanja Woyke

ISME J· June 2019

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Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi.
Joel A Boyd, Sean P Jungbluth, Andy O Leu, Paul N Evans, Ben J Woodcroft

ISME J· May 2019

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Elemental Composition, Phosphorous Uptake, and Characteristics of Growth of a SAR11 Strain in Batch and Continuous Culture.
Scott R Grant, Matthew J Church, Sara Ferrón, Edward A Laws, Michael S Rappé

mSystems· May 2019

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The importance of designating type material for uncultured taxa.
Maria Chuvochina, Christian Rinke, Donovan H Parks, Michael S Rappé, Gene W Tyson

Syst Appl Microbiol· January 2019

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Author Correction: Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes.
Tom O Delmont, Christopher Quince, Alon Shaiber, Özcan C Esen, Sonny Tm Lee

Nat Microbiol· August 2018

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Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes.
Tom O Delmont, Christopher Quince, Alon Shaiber, Özcan C Esen, Sonny Tm Lee

Nat Microbiol· July 2018

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Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle.
Karthik Anantharaman, Bela Hausmann, Sean P Jungbluth, Rose S Kantor, Adi Lavy

ISME J· June 2018

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Corrigendum: Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids.
Sean P Jungbluth, Jan P Amend, Michael S Rappé

Sci Data· July 2017

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Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems.
Sean P Jungbluth, Tijana Glavina Del Rio, Susannah G Tringe, Ramunas Stepanauskas, Michael S Rappé

PeerJ· April 2017

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Viruses in the Oceanic Basement.
Olivia D Nigro, Sean P Jungbluth, Huei-Ting Lin, Chih-Chiang Hsieh, Jaclyn A Miranda

mBio· March 2017

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Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids.
Sean P Jungbluth, Jan P Amend, Michael S Rappé

Sci Data· March 2017

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